Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04896 ATGGAGGGTGGTTCGGAGGGAGAGATGAAGAAGCCACCGGAGGGGGAGAACAAGGTCAAGCGCAAAATGAAGACTGCTTCGCAGTTGGAGGTTCTGGAGAAAACATATGCTGTGGAGGCCTACCCTTCGGAGGCGTTGCGGGCTGAGCTATCTGAGAAGTTGGGTCTGTCTGACCGTCAATTGCAGATGTGGTTCTGTCACCGGAGACTGAAGGACAGAAAGGCTGTGTCAACAGATAAGAAGCTGCAAAATGATCCCCCTCCAGCTTCGGCTCCGTTGGGGGAGTGTGTTGAGCAAATACCAGTGGCTGATGTTAGCCATGAACGTAGTTTGGCTTCTGGGTTGAAGCCATTTGGTCATCTGGACTCGCGGCGAGTTATGCCAAGGCCTGGGATGATGGTCATTCCTAGGATGGGAGCTGGATTGCATGCAATGGAGAGCAGCAGTTACTATGAACCTCATCAGGCCATAGAGGAGCTGAGAGCTATTGCATTTGTGGAGAGACAGTTAGGAGAGCCATTAAGGGAGGATGGACCGATTCTAGGGATGGAATTTGATTCCTTGCCACCGGGTGCATTTGGTGCACCAATAGGTAAACTTGGTTTTCTAATTTCAACTAAGGTTCATAGGTTTTGCCATGTAAGGGCTGATATAGCAAAAAGGCAAATGCAGCCGATGAGGTTGCAAAGAGCTCCTAAACTGCAATCTAGACACACATACAGAGATATGGAGGCCATATTCTGCTTTAGACAAATGTCTTCTAATATTCCAGGGGCAGTGACAATGGGGCAACACAGGCAATCTGGAAGGCCTTTTGAGGCAAAAATTTATGAACAGCTGGACAAGGGCGTTTCAAGGACTCTCCATGAATATCAATTTATTCCAGAACAGCCAACTGTTAGAAATGAAATGAATGAGCGAGTTGCCGCCCCTATCCACTATAATTCTCTTGATGGCATTCCACATGCTAGGACTATATTATCTAGTGCACGATCTTTCCATAAGGGGAATGAATCTGCACCTTATGGGTATGGAGTTCAAGGTCAGATACCTGCTCTAAATCTTTTGTCTCAGCAAGGTAGGCAGAATCATCTTTTGCCTTCTGCTTCAGGAGGGACTGACGATATTCCACGACAGAACCAATTTGTTGATGTAACTGTTGGTACTCATAGTGAGGCTCACCCAGTAACTCTTATTGACGGCCCTCTAATACCATCTGATAGGAGGATTATCCATGAGGAGGAACTTTCAAGGTTTCAAAGGAAGCGGAAGAATGAAGAGGCTAGAATGCAACGGGAACTTGAAGCACAAGAGAAAAGAAATAGAAAAGAGCTTGAAAAGCAGGATATCCTAAGGCAAAAGAGAGAAGAGCAAATAAAGAAAGAGATGGAGAGGCATGAACGTGAAAGGCGGAAGGAAGAGGAAAGGTTATTGCGTGAAAGACAGCGAGAGGAGGAGAGGTACCAAAGAGAACAGAGGCGTGAACTGGAGCGGCGGGAGAAGTTTTTACAAAAGGAATCAATCAGAGCTGAGAAAATGAGACAGAAGGAAGAACTGCGGAGGGAGAAAGAGGCAGCAAGGATAAAAGCTGCCAATGAGAGAGCTATTGCCCGCAGAATGGCCAAAGAATCAATGGAACTTATTGAAGATGAACGTCTAGAACTCATGGAGTTAGCTGCATCTAAGAAAGGGCTTTCTTCAATATTAGCTCTTGACTATGAAACTATGCAAAATCTTGAAATATACGATGATTCTGATGAGAATGTAGGAAATCTTCTGATGGTTTGGAGATTCTTGATTACCTTTGTTGATGTTCTTGGAATATGGCCCTTTACCTTGGATGAACTTATACAAGCTTTTCATGACTATGATCCTCGGTTGTTAGGTGAGATTCATATTGCTCTTCTGAGATCCATTGTAAAAGATATTGAAGATGTTGCAAGAACACCCTCTACTGGCTCAGGAGCTAACCAGAACAGTATTGCCAACTCTGGTGGGGGGCATCCACAGGTAGTTGAAGGGGCGTATATGTGGGGTTTTGATATAAGAAATTGGCAGCAGCATTTAAATCCATTAACATGGCCAGAGATTTTGCGACAATTTGCTTTGTCAGCAGGATTTGGGCCTAAACTGAAGAAATGGAATATCGAGCAGGTGCATCCTTGCAATAACAATGAGGGTAATGATGGTAAAGATATAATTTCTAATCTACGCAGTGGAGCAGCTGTTGAAAATGCTCTTGCTATTATGCAAGAGAAGGGATTATCTAACCCAAGAAGATCTAGACATCGTTTGACGCCTGGAACTGTTAAATATGCTGCTTTTCATGTCCTTTCTCTCGAAGGAAACAGAGGCCTCAATATATTGGAAGTTGCAGACAAGATTCAGAAATCTGGGCTTCGTGATCTTACTACAAGCAAAACACCAGAGGCTTCTATAGCTGCTGCTTTGTCTAGGGATACAAAATTATTTGAAAGGACAGCTCCTTCAACTTATTGTGTACGTGCTGCATATAGAAAGGACCCAGTTGATTCTGAAACCATCTATTCAGCTGCCAGGGAAAGAATCAGGATATTCAAAAGTGGATTTGCGGATGCAGAAGAAGCTGATGATGGTGAAAGGGATGAAGATTCTGAAAGTGATGTGGCAGAAGATGCTGAGATTGATGATTTAGGAACTGGATCAAATACGAAGGAGGGATCCAATTCTGAGGAATTTAATGCTAACAATGTAATGAGATGTAGAAGGGAGTCAAGGGACAGTGGTGAGGCTTTGAAAATTCCAGGTGCTTGCTGTGAGAAAGTGGATAAGGGTTTAGCTTCAGTTGTTGCTGAAGGCTTCAACAAACATAAAGATGTTAGTACCTGTAGTGAAATTCCTGTCTGCAGCAATGATGTGACTAATCCTATTCTAGAAGGCATGGATGTTGATGAAAGCATTCCAGGTGAACCATGGGTACAAGGGCTTATGGAAGGAGAGTACTCAGATCTTAGTGTAGAGGAGCGTCTTCACGCTCTTGTTGCTTTGATTGGTGTGGCAATTGAAGGAAATTCTATCCGCATTGTACTTGAGGAACGTCTAGAAGCAGCAAATACTTTAAAGAAGCAGATGTGGGCAGAAGCACAGCTTGATAAACGACGTATCAAAGAGGATTATTTTGCTAAGATACAGTCTGTCTCTTATTTGATCAGTAAGAATGAACCAGCTGTTTTATCTCCATCAGTAGAGGGTAAACAGTGTCCATTGCTTACTGTTGATGACAAAAATGATAAGGCTTTAGTTTCTTCAATTGACCAGCATGAACAGGCAAACACACTACAAGAGAATCAGAATCATCTTCAGAGTTCCCCATTAGAAGTCAACACACAGACACAAGATTGCTCTACTGGCCTAGATAATTACTCTTTCCAACAATCAGGATATCCTGCTGAAAAATCAAGATCAAATTTAAAATCATACATTGGCTATTTGGCAGAACAAATTTACATGTACAGGTCATTGCCTCTTGGTTTGGATCGAAGACGTAATAGATACTGGCAGTTCATTACATCTGCTTCTCAAAATGATCCAGGTTGTGGTAGGATTTTTGTGGAGTTGCACGACGGTTGTTGGAAGTTGATTGATTCTGAAGAGAGTTTTGATGCTCTATTGGCATCTTTGGATGTACGTGGGATCAGGGAGTCTCACTTGCATATGATGTTGCAAAGAATTGAGATGTCCTTCAAGGAATCTGTTAGAAGAAATGTCCTAAATGGTAACTTGAGAATGCAAAACAGAGACACTGTAAAGAAACTCAAGACAGAAGCTATTGAAATGGCAACAGACCTAGATTGCAGTGCTAATATTTACTGTCCTGCTTCTGTATGCATTGATAATTTGGATGAATCAGAGACCTCCACATCTTTTGTGGTTCAGCTTGGAAGAAATGAAGCTGATAACAAAGATACTTTTCTGAGATATTGGGACTTTGAGAAATGGATGCGAAAGGAATGCCTAAATTCCTCAGTATTATGTGGGATGAAGTTTGGGAAGAAAAGATGCAAAGAGCTGCTGGCCATATGTGATTTGTGCCACCATGTCTATTTCTTTGGAGGAACCTCATGTCCTTCATGCCATAGAACTTTCAGTACTTGTAAAAGCAACGTTAGTTCTTCTACACATATTGCTCAATCTGAAGGCAGAGTGAAGATTGGCACTGATTATATTCTTGTTTCATCATCATCTCCTTTGAGGATGAGATTGCTCAAAATCCTCTTGTCAGTTGTTGAGGCAACCCTTCCACAAGAAGCTCTGCAACCTCTTTGGACAGAGAGGTACAGGAAATCTTGGAGTACAAAGCTGGAAGCTTCCACATCATTTGAAGACCTTCTTCAGATATTGACTGCATTGGAAGGTGCTATTAAGAGGGAGTATTTGGCTTCAAATTTTGTAACTACCCGTGAGCTGTTGGGTTCCATCAGTTCTGCATGTCCTACTAATGATTCCCTAGATGGTGAAAGTATGCCGGTACTTCCATGGGTGCCATATACCACGGCTGCTGTGGCTCTAAGGCTCTTGGAACTTGATGCATGCATCTTTTACACCTCAAAGCAGAAGTTGGAGTCTGAGAAGGATAAGAAAATAGGAATTGTTATGAAGCTTCCATCAAAATATGCTGCTGCTAAAATTTCCTGCAATGCTGGTGCAACAGAAACTTCACTTCAGGCCAAGCATACTGTAGAGAAACATGTTGATCTTGGAGCTGGCCTTACAAGCTACAGCAGAGGGCAAAGGACTCACCAAGCCCGTGCTCACTCTCCTGGTGGAAGATCACAAGTAAAGGTTGTTAGTTCAAGATCAAATTCTAGAAAGAGAAGCACTGCCTCTAACAGCAGGAAAATGGAAAAATTACTTGGATGGAAAGGAAAACCATGCGGACGAGGACATGTTCGTGGTCGTCGGAGCATTAGAAACAGGCAGAAACCAGCAGCCAAGTTGGATGTGATAAGTAGTGAGAGGGATGCCCCAAAAGATATTATCACAGAGGAAGCACCTGGTATTTTTGTCAGGGAGGATATTAATGAAGGTGACATGGAAGCCACTGCTCTAAATGCTTGTAGTTCAGATAGATCAGGCTATGAAGATGATATTTATCAACCAACAGGTGATGAGTATGATTATTTGGTGGATAATAATGATGGATATCAGGGTGAATTTAGCGCAAAATCGGAGAACTTCATGGAAAAGAGCCTCTATAATGTGGATGATGAGGAAGGTGTGGATATTGATGATGATGTTGATGTCGATGTTAACTATGAAGAGGAGGATGAGCAAGTCGATCTTGATGTTGAAGATTATATAGTTGGGGGGGACTCAGATAGGGTGAACAAGAGAGTAGAAAATGCAGAACAAAGCAAGGATCCGGATGGAGTGGATTCTGCTTCATCAGATTACAGTGATTAA 5442 0.4256 MEGGSEGEMKKPPEGENKVKRKMKTASQLEVLEKTYAVEAYPSEALRAELSEKLGLSDRQLQMWFCHRRLKDRKAVSTDKKLQNDPPPASAPLGECVEQIPVADVSHERSLASGLKPFGHLDSRRVMPRPGMMVIPRMGAGLHAMESSSYYEPHQAIEELRAIAFVERQLGEPLREDGPILGMEFDSLPPGAFGAPIGKLGFLISTKVHRFCHVRADIAKRQMQPMRLQRAPKLQSRHTYRDMEAIFCFRQMSSNIPGAVTMGQHRQSGRPFEAKIYEQLDKGVSRTLHEYQFIPEQPTVRNEMNERVAAPIHYNSLDGIPHARTILSSARSFHKGNESAPYGYGVQGQIPALNLLSQQGRQNHLLPSASGGTDDIPRQNQFVDVTVGTHSEAHPVTLIDGPLIPSDRRIIHEEELSRFQRKRKNEEARMQRELEAQEKRNRKELEKQDILRQKREEQIKKEMERHERERRKEEERLLRERQREEERYQREQRRELERREKFLQKESIRAEKMRQKEELRREKEAARIKAANERAIARRMAKESMELIEDERLELMELAASKKGLSSILALDYETMQNLEIYDDSDENVGNLLMVWRFLITFVDVLGIWPFTLDELIQAFHDYDPRLLGEIHIALLRSIVKDIEDVARTPSTGSGANQNSIANSGGGHPQVVEGAYMWGFDIRNWQQHLNPLTWPEILRQFALSAGFGPKLKKWNIEQVHPCNNNEGNDGKDIISNLRSGAAVENALAIMQEKGLSNPRRSRHRLTPGTVKYAAFHVLSLEGNRGLNILEVADKIQKSGLRDLTTSKTPEASIAAALSRDTKLFERTAPSTYCVRAAYRKDPVDSETIYSAARERIRIFKSGFADAEEADDGERDEDSESDVAEDAEIDDLGTGSNTKEGSNSEEFNANNVMRCRRESRDSGEALKIPGACCEKVDKGLASVVAEGFNKHKDVSTCSEIPVCSNDVTNPILEGMDVDESIPGEPWVQGLMEGEYSDLSVEERLHALVALIGVAIEGNSIRIVLEERLEAANTLKKQMWAEAQLDKRRIKEDYFAKIQSVSYLISKNEPAVLSPSVEGKQCPLLTVDDKNDKALVSSIDQHEQANTLQENQNHLQSSPLEVNTQTQDCSTGLDNYSFQQSGYPAEKSRSNLKSYIGYLAEQIYMYRSLPLGLDRRRNRYWQFITSASQNDPGCGRIFVELHDGCWKLIDSEESFDALLASLDVRGIRESHLHMMLQRIEMSFKESVRRNVLNGNLRMQNRDTVKKLKTEAIEMATDLDCSANIYCPASVCIDNLDESETSTSFVVQLGRNEADNKDTFLRYWDFEKWMRKECLNSSVLCGMKFGKKRCKELLAICDLCHHVYFFGGTSCPSCHRTFSTCKSNVSSSTHIAQSEGRVKIGTDYILVSSSSPLRMRLLKILLSVVEATLPQEALQPLWTERYRKSWSTKLEASTSFEDLLQILTALEGAIKREYLASNFVTTRELLGSISSACPTNDSLDGESMPVLPWVPYTTAAVALRLLELDACIFYTSKQKLESEKDKKIGIVMKLPSKYAAAKISCNAGATETSLQAKHTVEKHVDLGAGLTSYSRGQRTHQARAHSPGGRSQVKVVSSRSNSRKRSTASNSRKMEKLLGWKGKPCGRGHVRGRRSIRNRQKPAAKLDVISSERDAPKDIITEEAPGIFVREDINEGDMEATALNACSSDRSGYEDDIYQPTGDEYDYLVDNNDGYQGEFSAKSENFMEKSLYNVDDEEGVDIDDDVDVDVNYEEEDEQVDLDVEDYIVGGDSDRVNKRVENAEQSKDPDGVDSASSDYSD. 1814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04896 1813 Pfam HB1, ASXL, restriction endonuclease HTH domain 768 836 IPR007759 GO:0006355
Seca4g04896 1813 Gene3D - 9 89 - -
Seca4g04896 1813 MobiDBLite consensus disorder prediction 868 888 - -
Seca4g04896 1813 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 982 1024 IPR028942 -
Seca4g04896 1813 Pfam DDT domain 587 642 IPR018501 -
Seca4g04896 1813 ProSiteProfiles DDT domain profile. 586 645 IPR018501 -
Seca4g04896 1813 MobiDBLite consensus disorder prediction 1 24 - -
Seca4g04896 1813 CDD homeodomain 18 74 IPR001356 GO:0003677
Seca4g04896 1813 SMART testlast3 586 645 IPR018501 -
Seca4g04896 1813 MobiDBLite consensus disorder prediction 75 94 - -
Seca4g04896 1813 MobiDBLite consensus disorder prediction 866 904 - -
Seca4g04896 1813 SMART HOX_1 17 79 IPR001356 GO:0003677
Seca4g04896 1813 ProSiteProfiles 'Homeobox' domain profile. 15 75 IPR001356 GO:0003677
Seca4g04896 1813 MobiDBLite consensus disorder prediction 420 449 - -
Seca4g04896 1813 Coils Coil 409 536 - -
Seca4g04896 1813 SUPERFAMILY Homeodomain-like 12 74 IPR009057 -
Seca4g04896 1813 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 4 1813 IPR044977 GO:0006357
Seca4g04896 1813 MobiDBLite consensus disorder prediction 1585 1626 - -
Seca4g04896 1813 ProSiteProfiles HARE-type HTH domain profile. 768 837 IPR007759 GO:0006355
Seca4g04896 1813 MobiDBLite consensus disorder prediction 1765 1779 - -
Seca4g04896 1813 MobiDBLite consensus disorder prediction 1765 1813 - -
Seca4g04896 1813 MobiDBLite consensus disorder prediction 1585 1620 - -
Seca4g04896 1813 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1165 1237 IPR028941 -
Seca4g04896 1813 Pfam Homeodomain 20 74 IPR001356 GO:0003677
Seca4g04896 1813 MobiDBLite consensus disorder prediction 1780 1800 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04896 Seca-Chr4 90910485 90926969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04896 1 1555 Homeobox Transcription Factor Family AT5G44180 46.510 0.0 1219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca4g04896 WSD 1.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04896 - - gmx:100797480 2137.07