Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04885 ATGATACCAACTTATAGTTATTCAGTACTATCTTCTCCTATGCCGCCTTTAGATCTTAATGAAGATCACACTGATCACCGGTTTTTCAGTATAAACCATCAAGCCTCTTCTTCATCTTCTTCTCTATCATATTCCATACTCTTCAACACGGATCAAGATCAAGGAGGATCTTACTATTGGGGACCAAAGCAGTTACAATGTGATGAAGAGGCCGAGAAGATTGTTCCTAATTCTATCACATCATGGGATCATCCAGCAGTTGAAAAGAATGGAAACAGCAGTGACGACCTGAAGAAAGAAGAAGGTGGGAATGATCAAAATATTGAAGGTGAGGATATGAATTCAATGAAGTGGATGCCTTCAAAAATGAGAATCTTGCGGAGGATGATGCTATCAGATCATACGGGTTCTTCTGATGAAAAGCAAAATTCATCACCACCTCTAGGAACAGCCAGCAACAACAATTCTTCAAACAATATCAATACTGTTAGGGTTTGTGCTGATTGCCACACCACTAAGACCCCTCTCTGGAGGGCTGGACCAACAGGTCCCAAGAGTATATGCAGCATGGCCGTGTTACAAAGAAGACAGATGTGTGGAGTCTTGGGATACTGA 615 0.4146 MIPTYSYSVLSSPMPPLDLNEDHTDHRFFSINHQASSSSSSLSYSILFNTDQDQGGSYYWGPKQLQCDEEAEKIVPNSITSWDHPAVEKNGNSSDDLKKEEGGNDQNIEGEDMNSMKWMPSKMRILRRMMLSDHTGSSDEKQNSSPPLGTASNNNSSNNINTVRVCADCHTTKTPLWRAGPTGPKSICSMAVLQRRQMCGVLGY. 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04885 204 Pfam GATA zinc finger 166 189 IPR000679 GO:0006355|GO:0043565
Seca4g04885 204 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 161 189 - -
Seca4g04885 204 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 188 - -
Seca4g04885 204 Gene3D - 155 198 IPR013088 GO:0006355|GO:0008270
Seca4g04885 204 MobiDBLite consensus disorder prediction 89 106 - -
Seca4g04885 204 MobiDBLite consensus disorder prediction 79 112 - -
Seca4g04885 204 SMART GATA_3 160 203 IPR000679 GO:0006355|GO:0043565
Seca4g04885 204 MobiDBLite consensus disorder prediction 136 159 - -
Seca4g04885 204 MobiDBLite consensus disorder prediction 133 159 - -
Seca4g04885 204 ProSiteProfiles GATA-type zinc finger domain profile. 160 183 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04885 Seca-Chr4 90799914 90801560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04885 114 188 C2C2-Gata Transcription Factor Family AT4G26150 42.308 1.91e-15 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca4g04885 GATA 3.2e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04885 - - gmx:100780875 199.134