Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04882 ATGTGGAGGTCGTTTCATAAACTGCGCTTCAGTGAGTTTGAGACTGTGGGGGCAATGGCGAGTGAAGACAATGTAATTGATGAGTTTGATGTTGAAGTTGAAACACTAGGAAAGATTAGGCACAAGAATATTGTAAGGTTGTGGTGTTGCTGCAATAGTGGTGAAAACATGCTACTGGTTTATGAGTATATGCCAAATGGGAGCTTGGGTGACTTGTTGAAGAATAACAGGAAAAGCTTATTGGATTGGCCGACTAGGTATAAAATTGCTATTGATGCTGCTGAGGGGCTTTCTTATTTGCATCATGATTGCGTCCCACCCATTGTTCACAGGGACGTCAAATCTAACAACATATTGTTGGATGGAGAGTTTGTGGCAAAAGTTTCAGATTTTGGAGTTGCCAAGATTGTTACTGGAGTCAACAAAGGGGGACAATCCATGTCTGTGATTGCAGGATCTTTTGGCTACATTGCACCAGAATATGCTTATACTCTTCGGGTGAATGAAAAGACTGATGTTTATAGTTTTGGGGTGGTGATTTTGGAGTTAGTAACTGGGAAACCCCCTATTGATGCAGAGTACGGGGAAAATGATTTGGTGAAATGGGTTTCCTCCATGTTGGAACAGAATGGATTGGATCATGTGATATACAAGGAAGAAATCAACAGGGTACTTAGTGTGGGGCTTCAATGTACCAGCTCTTTTCCAATGACTCGCCCTCCAATGAGGAGTGTGGTGAAAATGCTTCAGGATGTAGAAAAAGTTCCCAAATCCAAAAGTGTCAAGGATGGAGAAATCTCTTATAAATAG 810 0.4148 MWRSFHKLRFSEFETVGAMASEDNVIDEFDVEVETLGKIRHKNIVRLWCCCNSGENMLLVYEYMPNGSLGDLLKNNRKSLLDWPTRYKIAIDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGEFVAKVSDFGVAKIVTGVNKGGQSMSVIAGSFGYIAPEYAYTLRVNEKTDVYSFGVVILELVTGKPPIDAEYGENDLVKWVSSMLEQNGLDHVIYKEEINRVLSVGLQCTSSFPMTRPPMRSVVKMLQDVEKVPKSKSVKDGEISYK. 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04882 269 Gene3D Phosphorylase Kinase; domain 1 15 64 - -
Seca4g04882 269 ProSiteProfiles Protein kinase domain profile. 1 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04882 269 SUPERFAMILY Protein kinase-like (PK-like) 25 249 IPR011009 -
Seca4g04882 269 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 26 253 - -
Seca4g04882 269 FunFam Leucine-rich repeat receptor-like protein kinase 64 265 - -
Seca4g04882 269 ProSitePatterns Serine/Threonine protein kinases active-site signature. 108 120 IPR008271 GO:0004672|GO:0006468
Seca4g04882 269 Pfam Protein kinase domain 27 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04882 269 PIRSF ILK 16 265 - -
Seca4g04882 269 SMART serkin_6 10 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04882 269 Gene3D Transferase(Phosphotransferase) domain 1 65 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04882 Seca-Chr4 90787080 90788520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04882 4 267 Receptor kinase-like Gene Family AT1G28440 54.180 6.34e-108 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca4g04882 Pkinase 7.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04882 - - gmx:100796415 413.69