Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04881 ATGCTTCTCTGTTTTCTCTTCTTCGTGCTGTTTCTCTCTCCTCCGCCACTTACTCTCTCTCTAAACCAAGACGGCCTATTTCTCCTCAGCGCCAAGCAGCAACTCTCCGATCCTCAAAACTCCCTCGCCACGTGGAACGACGCCGACGCCACGCCCTGCCGGTGGAGCGGCATCACCTGCGACACCATCACCGGCTCCGTCACCGCCGTGAACCTCTCGTTTTCCGGCATCTCCGGCCCCTTCCCAAGCGTCCTCTGCCGCCTACCTTCTCTCTCCTTTCTCTCTCTCTCCGACAATCTCATCAGCTCCACCCTCCCAGCCGCCGTCATCGCCTCCTGCCGCCACCTTCGTCACCTTGACCTCTCCCAGAACGCCCTTGTGGGACCCATCCCTGACACCTTCTCCGAAATCCCCTCCCTCCGCCACCTCGACCTCTCCTTCAACAACCTCTCCGGCGACATTCCGGCGAGCCTCGGCCAGCTCCAGCAACTCGAATCACTCATCCTTGTCTTCAACTTCCTCAACGGGACAATTCCCAGTTCTCTCGGGAACATCTCAACACTGAAGAAGCTTCAACTCGCTTACAACCCGTTCACCCCGGGTCCTATACCGAGCGAACTTGGTAACCTCACCAACCTCCGTGACCTGTGGCTCGCACAATGCAATTTCGTGGCTTCTATTCCAACCTCGCTGGGTAACCTTGCTAGCTTAACGAGTCTTGATCTGTCACAAAACATGCTCACTGGAACAATACCAGAGTCGTTAGCGGGTTTGAAGAGCGTGACTCAGATTGAGCTCTATCACAACTCACTCTCCGGCGAGTTGCCAACCGGAATCTCGAACCTGACTCTGCTGGAACTGTTCGACGCGTCGATGAACAACTTGACTGGGACGATTCCTCCCGGGTTGTGCGAGTTGAAGCTCGCGTCGCTCAACTTGTTCGAGAATCGCCTCGAAGGGTCGTTGCCGGAGAGTATAGCTCGTTCTCCCAATCTCTACGAGCTCAAATTGTTCAGCAACAAGCTCGTTGGTCCTTTGCCGAGTGATTTGGGGAGCAACTCGCCGTTGCATCGAATTGATGTTTCGTACAACCAGTTTTCCGGCGAGATTCCGGCGAGCTTGTGCCGTCAGGGACAGTTCGAGGAACTCATTATGCTTCACAATTCATTTTCCGGGAAAATTCCTGATAGTCTTGGGAATTGCAAGAGTTTAACGAGGGTTCGGCTAAGTAACAATAACCTCTCTGGCGTTGTTCCTGATGCGTTCTGGAGCCTGCCCCGTTTGTATTTGCTTGAGCTTATTGATAATTCTTTTTCTGGGCATATTTCTAAAGCCATTTCAGGTGCCTCTAATCTCTCAAGTTTGGTACTTTCAAATAACCAGTTTTCTGGGTCAATTCCTGATGAAATTGGGTTATTGGATGGTCTTGTGGAATTTTCTGCCAGCCATAATAAACTTTCGGGTCAGATTCCGGACAGTATGTTCAAGTTAAACCAGTTGAGTAGTCTTAATCTCAGTTATAATCAACTTTCGGGAGAACTTATGGGTGGAATTGGTCATCTGACTAAGCTCACAAACCTTATTTTGACAAATAATAGTCTTAATGGCAGTATTCCAAGCGAATTAGGAAACTTGCCTGTGCTTGATATTCTTGATCTTTCTGACAACAGCTTCTCTGGTGAAATACCACCACAGCTGCAAAATTTGAAGCTCTATAAGTTCAACTTGTCAAACAACAAGCTTTCTGGTGATATTCCTCCCCTTTTTGCCAATGAAAAGTATAGAATGAGTTTTGTAGGAAATCCTGGCCTCTGTGGCCATCTCTTTGGACTTTGTCCAAGCTCTGGTGAGAGTAAAAAGAGGTCTGTGTGGATTTTTCGGTCCATATTTGTGCTTGCTGTAGTTGTTTTCATATTTGGAATGACCTGGTTTTACTTGAAATATAGGAAGGTCAAGAAGTTGAAAAAGGGGTTCAACATTTCTAAGTGGAGGTCATTTCATAAGCTCGGCTTTAGTGAGTTTGAAATTGTTAAATTGCTGAGTGAAGACAATGTAATTGGAAGTGGAGCATCTGGGAAGGTCTACAAGGTAGTGCTTAGCAATGGTGAGGTGGTGGCAGTGAAGAAATTGTGGAGAGCATCTAAGAATGTAAATGAAAATGTTCTTTCTGGAAAAGATGGGTTTGATGTTGAAGTTGAAACACTAGGAAAGATTAGGCACAAAAATATTGTAAGATTGTGGTGTTGTTACAATAGTGGTGTTAACAAACTACTGGTTTATGAATATATGCCAAATGGGAGCTTGGCTGATTTGTTGCAGAATAATGAGAAAAGATTGTTGGATTGGCCGACTAGGTATAAAATTGCTATTGATGCTGCTGAGGGGCTTTCTTATCTGCATCATGATTGTGTCCCACCCATTGTTCATAGGGACGTCAAATCTAACAATATATTGTTGGATGGAGAGTTTGTGGCAAAGGTTGCAGATTTTGGAGTTGCCAAAGTTGTTACCGGAGTCAGCAAAGATGGAGAATCCATGTCTGTGATTGCTGGATCTTATGGATACATTGCACCAGAATACGCATATACACTTCGAGTGACCGAAAAGAGTGATATTTATAGCTTTGGCGTGGTTATTTTGGAATTGGTAACAGGGAAACCCCCTATTGATGCAGAGTTCGGGGAAAATAATTTGGTAAAATGGGTTTCCTCAATGTTGGAAAAGAAAGAATTGGATCATGTGATTGATCCTACTCTAGATTCCAAATACAAGGAAGAAATAAGCAAGGTACTTAGTGTGGGGCTTCAATGTACCAACACTCTTCCAATAACCCGCCCTTCAATGAGGACTGTGGTGAAAATGCTTCATGATGTAAAAATAGTTCCCAAATCCAAAAGTGTCAAGGATGGAAAAATTTCATATTACCATGAAGAGGTGTCTTATAACCAGGGAAGCATCGTTTGA 2964 0.4561 MLLCFLFFVLFLSPPPLTLSLNQDGLFLLSAKQQLSDPQNSLATWNDADATPCRWSGITCDTITGSVTAVNLSFSGISGPFPSVLCRLPSLSFLSLSDNLISSTLPAAVIASCRHLRHLDLSQNALVGPIPDTFSEIPSLRHLDLSFNNLSGDIPASLGQLQQLESLILVFNFLNGTIPSSLGNISTLKKLQLAYNPFTPGPIPSELGNLTNLRDLWLAQCNFVASIPTSLGNLASLTSLDLSQNMLTGTIPESLAGLKSVTQIELYHNSLSGELPTGISNLTLLELFDASMNNLTGTIPPGLCELKLASLNLFENRLEGSLPESIARSPNLYELKLFSNKLVGPLPSDLGSNSPLHRIDVSYNQFSGEIPASLCRQGQFEELIMLHNSFSGKIPDSLGNCKSLTRVRLSNNNLSGVVPDAFWSLPRLYLLELIDNSFSGHISKAISGASNLSSLVLSNNQFSGSIPDEIGLLDGLVEFSASHNKLSGQIPDSMFKLNQLSSLNLSYNQLSGELMGGIGHLTKLTNLILTNNSLNGSIPSELGNLPVLDILDLSDNSFSGEIPPQLQNLKLYKFNLSNNKLSGDIPPLFANEKYRMSFVGNPGLCGHLFGLCPSSGESKKRSVWIFRSIFVLAVVVFIFGMTWFYLKYRKVKKLKKGFNISKWRSFHKLGFSEFEIVKLLSEDNVIGSGASGKVYKVVLSNGEVVAVKKLWRASKNVNENVLSGKDGFDVEVETLGKIRHKNIVRLWCCYNSGVNKLLVYEYMPNGSLADLLQNNEKRLLDWPTRYKIAIDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGEFVAKVADFGVAKVVTGVSKDGESMSVIAGSYGYIAPEYAYTLRVTEKSDIYSFGVVILELVTGKPPIDAEFGENNLVKWVSSMLEKKELDHVIDPTLDSKYKEEISKVLSVGLQCTNTLPITRPSMRTVVKMLHDVKIVPKSKSVKDGKISYYHEEVSYNQGSIV. 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04881 987 FunFam Leucine-rich receptor-like protein kinase family protein 203 301 - -
Seca4g04881 987 ProSiteProfiles Leucine-rich repeat profile. 139 161 IPR001611 GO:0005515
Seca4g04881 987 Pfam Protein kinase domain 682 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04881 987 ProSiteProfiles Leucine-rich repeat profile. 451 473 IPR001611 GO:0005515
Seca4g04881 987 SUPERFAMILY Protein kinase-like (PK-like) 679 955 IPR011009 -
Seca4g04881 987 SUPERFAMILY RNI-like 310 590 - -
Seca4g04881 987 Pfam Leucine rich repeat 89 150 IPR001611 GO:0005515
Seca4g04881 987 Pfam Leucine rich repeat 212 271 IPR001611 GO:0005515
Seca4g04881 987 Gene3D Phosphorylase Kinase; domain 1 663 762 - -
Seca4g04881 987 ProSiteProfiles Protein kinase domain profile. 680 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04881 987 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Seca4g04881 987 Gene3D Ribonuclease Inhibitor 24 175 IPR032675 -
Seca4g04881 987 Gene3D Ribonuclease Inhibitor 176 278 IPR032675 -
Seca4g04881 987 FunFam Receptor-like protein kinase HSL1 307 614 - -
Seca4g04881 987 Gene3D Transferase(Phosphotransferase) domain 1 763 977 - -
Seca4g04881 987 SMART serkin_6 680 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04881 987 SUPERFAMILY L domain-like 37 374 - -
Seca4g04881 987 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 21 185 - -
Seca4g04881 987 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 763 971 - -
Seca4g04881 987 PRINTS Leucine-rich repeat signature 497 510 - -
Seca4g04881 987 PRINTS Leucine-rich repeat signature 237 250 - -
Seca4g04881 987 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 188 956 - -
Seca4g04881 987 FunFam Receptor-like protein kinase HSL1 663 762 - -
Seca4g04881 987 SMART LRR_typ_2 282 306 IPR003591 -
Seca4g04881 987 SMART LRR_typ_2 137 161 IPR003591 -
Seca4g04881 987 SMART LRR_typ_2 401 424 IPR003591 -
Seca4g04881 987 SMART LRR_typ_2 497 520 IPR003591 -
Seca4g04881 987 SMART LRR_typ_2 234 258 IPR003591 -
Seca4g04881 987 SMART LRR_typ_2 88 112 IPR003591 -
Seca4g04881 987 SMART LRR_typ_2 521 545 IPR003591 -
Seca4g04881 987 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672|GO:0006468
Seca4g04881 987 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524
Seca4g04881 987 Gene3D Ribonuclease Inhibitor 280 615 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04881 Seca-Chr4 90723066 90726679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04881 16 987 Receptor kinase-like Gene Family AT1G28440 59.818 0.0 1155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca4g04881 Pkinase 6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04881 - - ccaj:109805711 1337.01