Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04878 ATGAGTTCATACCTACTCTTGAAGGCGAGAATGGAATTTGCTATACTCATCCAGAGAAGTTGCCAGGGAGTTAGCAAAGATGGCCTGATCCGCCATTTCTTTCACAGGCCTTCCAAGGCATATACAACAGGAACAAGGAAAAGGAGAAAGGTTCACTCTGATGAGGATGGTAGTGAGACACGTTGGCACAAAACAGGTAAGACTAGGCCAGTCTACAACAATACCAAGTTAAAAGGGTACAAGAAAATCCTTGTACTTTACACTAACTATGGAAAGCAAAGAAAGCCAGAGAAAACAAATTGGGTCATGCACCAATACCACCTTGGAAGTGATGAAGAGGAGAAAGAAGGTGAATTAGTGGTCTCCAAAGTTTTCTATCAAACCCAACCCAGACAATGTGGTTCACTAATGAAAGACTCAGTTACTGGAAAACACAACATCAAGGGTCAAAGCATGCATGAGGTTATCAATAACAAAAACAATAATGGGTTTGTTGAGTACTACCATTCAAATTTCATATCTTTTGATCAAGGGAGCCAACATAGATCTAACACTGCTCAAGTAATTCCTCATTTTCCTGTCCATGATGCTGCTCCTTATATTCCTTGA 609 0.4039 MSSYLLLKARMEFAILIQRSCQGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDEDGSETRWHKTGKTRPVYNNTKLKGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGSDEEEKEGELVVSKVFYQTQPRQCGSLMKDSVTGKHNIKGQSMHEVINNKNNNGFVEYYHSNFISFDQGSQHRSNTAQVIPHFPVHDAAPYIP. 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04878 202 Gene3D NAC domain 14 131 IPR036093 GO:0003677|GO:0006355
Seca4g04878 202 MobiDBLite consensus disorder prediction 47 66 - -
Seca4g04878 202 ProSiteProfiles NAC domain profile. 1 127 IPR003441 GO:0003677|GO:0006355
Seca4g04878 202 SUPERFAMILY NAC domain 26 127 IPR036093 GO:0003677|GO:0006355
Seca4g04878 202 Pfam No apical meristem (NAM) protein 27 108 IPR003441 GO:0003677|GO:0006355
Seca4g04878 202 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 22 152 IPR044799 GO:0003700
Seca4g04878 202 MobiDBLite consensus disorder prediction 41 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04878 Seca-Chr4 90655675 90657989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04878 23 202 NAC Transcription Factor Family AT4G28500 56.716 5.48e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g04878 NAM 7.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04878 - - gmx:100797459 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04878 4 90655675 90657989 Seca4g04878 4 90655675 90657989 ECH