Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04877 ATGATGGATGAAGGATCAGAAATCACCAATGGTTTCCCTCAGAACACAACTACTTCTGCATCTACTAACAATCCACCTGTTTTGAAAAGGAAGAGAAACCTTCCAGGAAACCCAGATCCTGAAGCTGAAGTCATAGCCTTATCACCAAAGACTCTCATGGCAACCAACAGATTCATGTGTGAAACTTGTGGGAAGGGTTTCCAAAGGGATCAAAATCTTCAACTCCATAGACGTGGACATAACCTTCCTTGGAAGCTTAAGCAGAGGACTAGCAAAGAAGTAAGGAAGAGAGTTTATGTCTGTCCAGAGAAGACTTGTGTCCACCATGATCCTTCAAGGGCACTTGGGGACTTAACTGGGATAAAAAAGCACTTTTGCAGAAAACATGGTGAAAAGAAGTGGAAGTGTGAGAAGTGCTCAAAGCGTTATGCTGTGCAGTCAGATTGGAAAGCACACTCAAAGACCTGTGGCACCAGAGAATACAAATGTGATTGTGGAACTATCTTTTCAAGGAGAGATAGCTTCATCACTCATAGGGCCTTCTGTGATGCCTTGGCAGAAGAAACAGCTAGGGTAAATGCAGCATCAGACATAAGCAACACATTAGGGGGAAACATTGGTTACAACATAATGGGAACACCCCTAGGCCCTAACATAGCAACCCAATTTCCTTCAATTTTCAAGCCAATTTCTAGCACTGAAGAAACAACCACTCAAACATCTAGGGGGTTATCCCTTTGGATGGGTCAAGCATCTCAGGCTCATGAAACAATGACTAATAATAGCAGCAATTTGCATGAGATTCATCAACTTGGCTCTGCCACTACCACAGAAGCAATATATGGTGGGACCCCACTTGTCCAATGCTCAAATCCTCCTCCAAACTCTACTAATTATCAGCTAAATTGGGTGTTTGGAACTAACCTTTCCTCCAATGTCAACAATACTATTTCACTTCCACTAGGAAATATTGTTAAGGATGGTGCAAACCAGCAGACAAGTGTTCCTTCCTTGTATAGCTCTCAACACCAAATATCACATCATCAAACATCTTCAGCAAACATGTCAGCCACAGCTTTGTTGCAGAAAGCTGCTCAAATTGGAGCAACCTCAACTGACCCATCATTCCTTGGGAGCTTAGGTTTGAAATGCAATAACAATCAAGTGCAAGATGGGAACAAGTTGATTAGTGGCATGTATGGTTCAGGTAATAATTCAGTGCTCATGACAAGTCTTGGGAGAGAGGCAGAGAACTCTGCATGTGATGACTTGTCACAAATGCACCCTGCCAAACGCAGACACGTGCAGAGTGAAGAGAGTAGTACTACTGCAGGGGGGCAAACAAGGGATTTTCTTGGTGTTGGTGTGCAAACCATTTGCCACCCTTCATCAATCAACGGATGGATTTGA 1410 0.4319 MMDEGSEITNGFPQNTTTSASTNNPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFMCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASDISNTLGGNIGYNIMGTPLGPNIATQFPSIFKPISSTEETTTQTSRGLSLWMGQASQAHETMTNNSSNLHEIHQLGSATTTEAIYGGTPLVQCSNPPPNSTNYQLNWVFGTNLSSNVNNTISLPLGNIVKDGANQQTSVPSLYSSQHQISHHQTSSANMSATALLQKAAQIGATSTDPSFLGSLGLKCNNNQVQDGNKLISGMYGSGNNSVLMTSLGREAENSACDDLSQMHPAKRRHVQSEESSTTAGGQTRDFLGVGVQTICHPSSINGWI. 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04877 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Seca4g04877 469 FunFam protein indeterminate-domain 12-like 37 105 - -
Seca4g04877 469 MobiDBLite consensus disorder prediction 427 448 - -
Seca4g04877 469 Gene3D Classic Zinc Finger 37 110 - -
Seca4g04877 469 Gene3D Classic Zinc Finger 127 194 - -
Seca4g04877 469 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Seca4g04877 469 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 457 IPR031140 -
Seca4g04877 469 MobiDBLite consensus disorder prediction 8 28 - -
Seca4g04877 469 SMART c2h2final6 99 129 IPR013087 -
Seca4g04877 469 SMART c2h2final6 134 154 IPR013087 -
Seca4g04877 469 SMART c2h2final6 58 80 IPR013087 -
Seca4g04877 469 MobiDBLite consensus disorder prediction 1 41 - -
Seca4g04877 469 FunFam protein indeterminate-domain 5, chloroplastic-like 112 191 - -
Seca4g04877 469 SUPERFAMILY beta-beta-alpha zinc fingers 57 154 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04877 Seca-Chr4 90634823 90636936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04877 24 469 IDZ Gene Family AT1G03840 53.200 7.31e-150 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g04877 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04877 K25870 - gmx:100790620 653.284