Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04859 ATGCAAAGAAGTAGTAATAACGGGATGCATTCAGCATGCGCGGCATGCAAGCATCAAAGGAAGAAATGCAGTGAAAATTGTATATTAGCACCTTACTTTCCATCAACCAGAAGCCGTGAATTCCATGCTGTACACAAGGTTTTTGGTGTTAGTAACATAACCAAATTGGTGAAGAATGCCAAAGAGGAAGATCGAAGAAGAGTTGTGGATTCATTGATATGGGAAGCATCTTGTAGACAAAGAGATCCTATACATGGTCCTTATGGAGAATACACAAAAGTTTACAATGAGTATAAAAAAGTGTTTGATCAACTTAAGATATTCAGAGGCCAAAACCAACTATTGCATTTGCCAGCTCATCAAGGATTAAAATCTGTAGAAGATTTGATTGCATGCAATGGGACCAAAGGGAAACGCCATCAAGAAGAAGGAGCTGATAATGGAATAGATTATCTTCATCATGAGAATAAGAATGGTATTATTGATTCTACCATTTATAATGCCTTTTGTTCAAATTATTTACAAGATTTTGAGAATGTGAGGCAGGAAGTTGTCATCCCATTTCAGCAGAACTCTTACTATATCACAGGTACCAATCTCTAA 603 0.3665 MQRSSNNGMHSACAACKHQRKKCSENCILAPYFPSTRSREFHAVHKVFGVSNITKLVKNAKEEDRRRVVDSLIWEASCRQRDPIHGPYGEYTKVYNEYKKVFDQLKIFRGQNQLLHLPAHQGLKSVEDLIACNGTKGKRHQEEGADNGIDYLHHENKNGIIDSTIYNAFCSNYLQDFENVRQEVVIPFQQNSYYITGTNL. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04859 200 Pfam Lateral organ boundaries (LOB) domain 12 107 IPR004883 -
Seca4g04859 200 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 118 - -
Seca4g04859 200 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04859 Seca-Chr4 90389230 90389832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04859 10 99 AS2 family AT1G06280 60.000 1.83e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca4g04859 LOB 4.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04859 - - gmx:100809173 298.516