Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04857 ATGGCGGGTCCTCTTCTTCTTCGTTCTCTCTGCTCTTCCACCAGAAAATCCTTTTCCTCTTCTCCACCTTTCACTCCCTCTCGTTTCTTCTCACGCGCCTTCGCCGCTGCTCCTGCGCCCGCCGCCTCTTCCTCCACCTCGCCTGCCGGATCCCTCGACCCCAGCCGCCTCCGCAACGTGGCGGTCATCGCCCATGTCGACCACGGCAAGACCACCCTCATGGACCGCATTCTCCGCCAGTGCGGCGCTGACATCCCCCACGAGCGCGCCATGGATTCCATCTCCCTCGAACGCGAGCGCGGCATCACCATTGCTTCCAAGGTTACATCTGTTTCGTGGAAAGAAAATGAGCTGAACATGGTTGATACTCCTGGACATGCTGATTTTGGTGGTGAGGTTGAACGTGTTGTTGGCATGGTTGAGGGAGCAATTTTGGTTGTTGATGCTGGGGAAGGTCCACTTGCGCAGACAAAATTTGTTCTTGCAAAAGCATTGAAGTATGGGTTGCGTCCTATTCTTCTTTTAAACAAAGTAGACCGACCTTCAGTTACTGAGGAGACATGTGATGAAGTTGAGAGTCTGGTGTTTGATCTATTTGCCAACCTAGGTGCTACAGAGGAGCAACTTGACTTTCCAGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCATCCACCACCTTTACCAAGGATCCTCCTGCCGAGGCCAAAAATATGTCACAGTTGCTTGATTCCATTGTAACGCATGTCCCGCCACCAAATGCAAGCACTGATGCACCTTTCCAAATGCTGGTTTCAATGATGGAACGAGACTTCTATCTTGGGCGAATTTTGACTGGACGTGTGTATTCTGGGGTTGTTCGTGTTGGTGATAGGGTTCATGGACTACGTAATAAAGATTCTGGTGCTGAAAAGATTGAAGATGGAAAGGTGGTGAAACTGATGAAAAAGAAGGGTACAAACATGGTTCTAACTGATTGTGCTGGAGCTGGTGATATAATTTCTGTTGCTGGCTTGGCGAGTCCATCAATAGGCCATACTGTGGCAACTGTGGAGGTTATGTCTGCACTGCCCACTGTTGAATTGGATCCCCCAACTATTTCCATGACTTTTGGTGTAAATGATTCCCCATTAGCTGGTCGTGATGGCACTCATTTGACTGGGGGAAGAATTGGCGAACGACTGATGGCTGAAGCTGAAACCAACCTTGCCATAAATGTGCTTCCAGCCTTATCAGAATCATATGAAGTTCAGGGAAGAGGAGAGCTACAGCTGGGTATTTTAATTGAGAATATGAGGCGTGAAGGATTCGAGTTATCTGTCTCTCCACCCAAAGTCATGTATAAAACTGAAAATAGTCAGAAACTTGAGCCAATAGAAGAGGTTACAATTGAGGTAAATGATGAGCACGTTGGCTTGGTAATGGAAGCCTTGTCTCATAGACGAGCTGAGGTTACTGACATGGGTCCTGTCTCAGGAACTGTTGGTCGAACTAGATTGTCTATGACTTGTCCATCAAGGGGCCTGGTTGGTTACAGGAGTGTGTTCAGCAGTGACACACGCGGAACTGGGTTCATGCATCGTGCTTTCTTTGCGTATGAGAAATTTCGAGGCCCTCTCGGCAATGTTAGGAAAGGAGTCCTGGTATGTTTTTCTGCTGCTGTCCCTACTTATAAGAGCTTAATGATAACAAGAATTACACCGAGTTACTACTCAAATGATGTGTTTCACTTCAATTCATTAAGCTTGTGTTTAGCGTGA 1758 0.4761 MAGPLLLRSLCSSTRKSFSSSPPFTPSRFFSRAFAAAPAPAASSSTSPAGSLDPSRLRNVAVIAHVDHGKTTLMDRILRQCGADIPHERAMDSISLERERGITIASKVTSVSWKENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPSVTEETCDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTTFTKDPPAEAKNMSQLLDSIVTHVPPPNASTDAPFQMLVSMMERDFYLGRILTGRVYSGVVRVGDRVHGLRNKDSGAEKIEDGKVVKLMKKKGTNMVLTDCAGAGDIISVAGLASPSIGHTVATVEVMSALPTVELDPPTISMTFGVNDSPLAGRDGTHLTGGRIGERLMAEAETNLAINVLPALSESYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENSQKLEPIEEVTIEVNDEHVGLVMEALSHRRAEVTDMGPVSGTVGRTRLSMTCPSRGLVGYRSVFSSDTRGTGFMHRAFFAYEKFRGPLGNVRKGVLVCFSAAVPTYKSLMITRITPSYYSNDVFHFNSLSLCLA. 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04857 585 CDD TypA_BipA 57 252 IPR047041 -
Seca4g04857 585 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 54 227 - -
Seca4g04857 585 FunFam GTP-binding protein TypA 56 253 - -
Seca4g04857 585 SUPERFAMILY EF-G C-terminal domain-like 362 445 IPR035647 -
Seca4g04857 585 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 55 253 IPR000795 GO:0003924|GO:0005525
Seca4g04857 585 CDD BipA_TypA_C 456 536 IPR035651 -
Seca4g04857 585 Gene3D Elongation Factor G (Translational Gtpase), domain 3 359 446 - -
Seca4g04857 585 FunFam GTP-binding protein TypA 447 541 - -
Seca4g04857 585 Pfam Elongation factor Tu domain 2 274 347 IPR004161 GO:0005525
Seca4g04857 585 NCBIfam small GTP-binding protein domain 58 197 IPR005225 GO:0005525
Seca4g04857 585 SUPERFAMILY Translation proteins 202 357 IPR009000 -
Seca4g04857 585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 262 IPR027417 -
Seca4g04857 585 SUPERFAMILY EF-G C-terminal domain-like 456 550 IPR035647 -
Seca4g04857 585 Gene3D Translation factors 254 358 - -
Seca4g04857 585 PRINTS GTP-binding elongation factor signature 99 107 IPR000795 GO:0003924|GO:0005525
Seca4g04857 585 PRINTS GTP-binding elongation factor signature 135 146 IPR000795 GO:0003924|GO:0005525
Seca4g04857 585 PRINTS GTP-binding elongation factor signature 171 180 IPR000795 GO:0003924|GO:0005525
Seca4g04857 585 PRINTS GTP-binding elongation factor signature 59 72 IPR000795 GO:0003924|GO:0005525
Seca4g04857 585 PRINTS GTP-binding elongation factor signature 119 129 IPR000795 GO:0003924|GO:0005525
Seca4g04857 585 Pfam Elongation factor Tu GTP binding domain 56 250 IPR000795 GO:0003924|GO:0005525
Seca4g04857 585 Gene3D - 447 540 - -
Seca4g04857 585 FunFam Elongation factor family protein 254 358 - -
Seca4g04857 585 CDD BipA_TypA_II 260 357 IPR047042 -
Seca4g04857 585 Gene3D - 55 253 IPR027417 -
Seca4g04857 585 Pfam Elongation factor G C-terminus 454 537 IPR000640 -
Seca4g04857 585 CDD BipA_III 364 441 IPR047043 -
Seca4g04857 585 FunFam GTP-binding protein TypA 365 474 - -
Seca4g04857 585 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 92 107 IPR031157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04857 Seca-Chr4 90311727 90325387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04857 56 180 Eukaryotic Initiation Factors Gene Family AT3G22980 41.985 2.47e-25 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04857 K06207 - gmx:100782425 942.184