Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04853 ATGATGAAAGAAAACTCCAAGGGCAAATGTGGATCTTCTTCTCATCAATCCATGAAAGAGAAGGAAAAACACCTGGTTGATAAGATTCAAGGGATTTTCACCAATCTTCAGTCTGCAAGAAAGGAAGGCAGGATCAATGACATTGTGATCTTTGAGGAGCAGATGCATCAGTTGCTCCGAGAGTGGAAGGCGGAACTGGAGTCTCCTGCCACCTCCTTAGCTGATGGAAGCCTTGATTCGTTTACTAGTGAACTGGCCCAATTATTGCAAGCAATTGAGGAGAAAGATGATGCAACTAGTCCTTTAACAAAGCCTGTGCCATTGAAGACTGAGCTCCATCCAAATAGCATTAGTGGTACTGATAGCAATTATCCGTTTTTTCAGGAGAAGTGTTTTGATGATAACCAACCACTAGTTCATCATACTTTTGAAGGCTCTGCTTCAACTTTGTACAACAATGCTTTTAATAGCTCAGATATGACTCAGTTGGATTATCATCCATTCAGTTTAAATCATGATTTGGGTCACAACACAGTAGGCCATAACTCTGATTTGATTGGTCAGTTTGATTTATACCATGAACTCAGGCCTAACACAGAAATAAAAAACTCTGAGTCAGCCCAATTTAGTTTTGAAGAAGGCTTTGATTGTAGCCAATTTCTTGAAGATGATGACACCATGCAGCGTGGAGAGAATATTATACCTAACATTCTTCCTAGTATCCGCCCTCCACCTTCTGCTTTTTTAGCCCCAAAATGTGCACTATGGGACTGTTTCAGACCTGCTCAAGGTTTAGAATGGTGCCAGCACTACTGTAGTAGTTGCCATGAGCTTTTGGCAAATAATGAGGGTCTTCCTGGTATGACACCAATTTTGCGACCTGGGGGCATTGGTGTGAAAGATGGTCCTTTGTTTGCTGCTGTTCTTGCAAAGACACAGGGAAAGGAAGTGGGCATCCCTAGATGTGAAGGTGCTGCTTCAACTAAATCCCCCTGGAATGCTCCAGAGTTCTTTGATCTTTCTTTTCTTGAGGGTGAAACTATTAGGGAGTGGCTCTTCTTTGACAAGCCTAGAAGGGCATTTGAAAGTGGAAATAGAAAACAGAGATCACTTCCAGATTACAGTGGGCGTGGTTGGCATGAATCAAGGAAGCAGGTGATGAAGGAACACGGGGGACAAAAGAGGTCCTATTACATGGACCCCCAGCCTCTTAGTTATCTTGAGTGGCATTTATTTGAGTATGAGATCAATAACCATGATGGCTGTGCATTATACAGATTAGAACTAAAGCTAGTGGATAAAAAGAAAAGTCTTAAAGGAAAAGTGACTAAGGAATCTCTTACTGATTTACAAAACAAGATGGGAAAGCTAACTGCTGCTGTTCCATCATCAGATGATGGACACCCTGACAAGGGAAAAACAAAGGCCAAGTCTGAGAATGTTGGCTCTCCTGAAAAATAA 1461 0.4189 MMKENSKGKCGSSSHQSMKEKEKHLVDKIQGIFTNLQSARKEGRINDIVIFEEQMHQLLREWKAELESPATSLADGSLDSFTSELAQLLQAIEEKDDATSPLTKPVPLKTELHPNSISGTDSNYPFFQEKCFDDNQPLVHHTFEGSASTLYNNAFNSSDMTQLDYHPFSLNHDLGHNTVGHNSDLIGQFDLYHELRPNTEIKNSESAQFSFEEGFDCSQFLEDDDTMQRGENIIPNILPSIRPPPSAFLAPKCALWDCFRPAQGLEWCQHYCSSCHELLANNEGLPGMTPILRPGGIGVKDGPLFAAVLAKTQGKEVGIPRCEGAASTKSPWNAPEFFDLSFLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKEHGGQKRSYYMDPQPLSYLEWHLFEYEINNHDGCALYRLELKLVDKKKSLKGKVTKESLTDLQNKMGKLTAAVPSSDDGHPDKGKTKAKSENVGSPEK. 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04853 486 MobiDBLite consensus disorder prediction 455 486 - -
Seca4g04853 486 MobiDBLite consensus disorder prediction 373 394 - -
Seca4g04853 486 Coils Coil 78 98 - -
Seca4g04853 486 PANTHER TRANSCRIPTION FACTOR VOZ1 2 480 IPR039277 GO:0006355|GO:0048578
Seca4g04853 486 MobiDBLite consensus disorder prediction 1 23 - -
Seca4g04853 486 MobiDBLite consensus disorder prediction 364 394 - -
Seca4g04853 486 MobiDBLite consensus disorder prediction 466 486 - -
Seca4g04853 486 MobiDBLite consensus disorder prediction 96 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04853 Seca-Chr4 90271761 90275726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04853 1 462 VOZ-9 Transcription Factor Family AT1G28520 53.419 2.85e-160 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF VOZ Seca4g04853 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04853 - - psat:127101646 828.935