Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04850 ATGCACAAGTATGGCCAACCCATGCCACTCTCACAACTCGTGGCTTCACTTTCAATCCACCCAACCAAAACCAACAAACTCTGTCGCTTGATGCGAATTTTGACCCATTCAGGTTTCTTCTCTCAACAGAATGTCACCGAAAATGAACTAGAGGTAAAGTATGTTCTAACTAATGCATCTAGACTTCTACTTAAGGACAATCCATTGAGTATGACATCTTTCTTGCAAGTCATGCTTGATCCAAATTTGATTAAGCCATGGTATCAACTTTCTACTTGGTTCAAAAATGAAGATCCTAATCCTACACCATTTCACATAGAGAAAAGGATGAATTTTTGGGATTATGCTAGCCATGAGCCTAAAATTAGTAACTTGTTCAATGATGCCATGGCAAGTGATGCTCAATTGGTTTCTAATAGATTGGAGTCATTAGTTGATGTTGGTGGAGGCACAGGAGCTATGGCAAAGGCCATTGCGGAATCATTCCCTCAGCTTAATTGCACTGTATTGGATCTTCCGCATGTTGCTGCTAGTTTGCATGGAAGTGAGAACTTGAAATTTGATGGAGGAGACATGTTTAAGGCAATTCCTCCAGTCGATGTCGTCTTGTTGAAGGTAAAATGTTATCACATATATACCAATTATATATATCTTCTGCTGATATATAGAACAAAACCTATGGGATCCCATGGTGAAGACAGTACTAGTGCTGACAAACTAGTTGGATCTCAAAACCACTTATTCAATCATATAAACTCTATGTCCCTTAAATGTGCAATTGACTTGAGCATTCCTGATATCATACACAAATATGGCCAACCCATGCCACTCTCACAACTCATGGCTTCACTACCAATCCACCCCTCCAAAACTCAGGGCATAATTCCCTTGATGCGAACTTTGACCCATTCTGGTTTCTTTATCACTCTGCAAAATGAGCAAGAAGTGAGGTATGCACTAACTGATGCTTCTAGACTATTGCTTAAGGACCATCCCTTGAAAATGGTATCTTTCTTGCTTGCCGCAATTGATCCAATCTTTTTGAAGCCATGGTATCAAATTTCTAATCGGTTCAAAACCCAAGATATTCCTACACCATTTCGCACAGAAAATGGGTTGGCATTTTGGGATTATGCTGCCCATGATCCCAAAGTCAATCGCTTATTCAATAATGCCATTGCTAGTGTTACTCAATTAACTTTAAGTGTGGTGGAGGAAAAGTACAAGGAGGTGTACAAGGGATTGGAGTCCTTGGTTGATGTTGGGGGAGGCACAGGCAATCTGGCTAAGGCCATTGCAGAGTCATTCCCACAATTGGAATGCATTGTATTTGATCTTCCACATGTTGTTGCTGGCTTGCAAGGAAGTGGAAACTTAAAATATGTTGGAGGGGACATGTTTAAGGCAATTCCTCCTGCTCATTCCATTTTGCTCAAGAATGTATTGCATGAGTGGAGTGACGAGGAATGCCTGAAAATACTGAAGAAATGCAAGGAGGCAATCTCGAGAAAAGATAAAGAGGGGAAGGTGATCATTATAGATGTGGTGATGGGGATTGAGAAGGCAGATAGTGAATTAGTTGAAACAAAGCTCTTCTATGCTTTGCTGAAGATGAGGACAGTCACTGGAAAAGAGAGGAATGAGAAAGAATGGGCCAACCTGATTTTGTCTGCTGGTTTCAGCCGCTATAAAATACATCCTCTTCTGGGTTTTAGGTATGTCATTGAGGTTTATCCATAG 1740 0.4069 MHKYGQPMPLSQLVASLSIHPTKTNKLCRLMRILTHSGFFSQQNVTENELEVKYVLTNASRLLLKDNPLSMTSFLQVMLDPNLIKPWYQLSTWFKNEDPNPTPFHIEKRMNFWDYASHEPKISNLFNDAMASDAQLVSNRLESLVDVGGGTGAMAKAIAESFPQLNCTVLDLPHVAASLHGSENLKFDGGDMFKAIPPVDVVLLKVKCYHIYTNYIYLLLIYRTKPMGSHGEDSTSADKLVGSQNHLFNHINSMSLKCAIDLSIPDIIHKYGQPMPLSQLMASLPIHPSKTQGIIPLMRTLTHSGFFITLQNEQEVRYALTDASRLLLKDHPLKMVSFLLAAIDPIFLKPWYQISNRFKTQDIPTPFRTENGLAFWDYAAHDPKVNRLFNNAIASVTQLTLSVVEEKYKEVYKGLESLVDVGGGTGNLAKAIAESFPQLECIVFDLPHVVAGLQGSGNLKYVGGDMFKAIPPAHSILLKNVLHEWSDEECLKILKKCKEAISRKDKEGKVIIIDVVMGIEKADSELVETKLFYALLKMRTVTGKERNEKEWANLILSAGFSRYKIHPLLGFRYVIEVYP. 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04850 579 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 244 579 IPR016461 GO:0008168
Seca4g04850 579 SUPERFAMILY "Winged helix" DNA-binding domain 2 68 IPR036390 -
Seca4g04850 579 Pfam O-methyltransferase domain 351 561 IPR001077 GO:0008171
Seca4g04850 579 Pfam O-methyltransferase domain 87 211 IPR001077 GO:0008171
Seca4g04850 579 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 68 215 IPR029063 -
Seca4g04850 579 Pfam Dimerisation domain 254 301 IPR012967 GO:0046983
Seca4g04850 579 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 205 IPR016461 GO:0008168
Seca4g04850 579 PANTHER O-METHYLTRANSFERASE 247 564 IPR016461 GO:0008168
Seca4g04850 579 CDD AdoMet_MTases 418 516 - -
Seca4g04850 579 FunFam O-methyltransferase ZRP4 329 579 - -
Seca4g04850 579 SUPERFAMILY "Winged helix" DNA-binding domain 244 332 IPR036390 -
Seca4g04850 579 Gene3D Vaccinia Virus protein VP39 328 579 IPR029063 -
Seca4g04850 579 Gene3D Vaccinia Virus protein VP39 64 220 IPR029063 -
Seca4g04850 579 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 333 578 IPR029063 -
Seca4g04850 579 Gene3D - 1 63 IPR036388 -
Seca4g04850 579 Gene3D - 229 327 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04850 Seca-Chr4 90194461 90208847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04850 227 565 Monolignol Biosynthesis Gene Families AT5G54160 30.986 1.49e-48 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04850 - K16040 gmx:100793263 441.81