Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g04826 | ATGAACAGAAAGATAATGTTCATATATATATCCATGCTTTCCTTGTCAATGGTCTCTGTTATTTTCTTCTCCTTTTACCTCTACACAAAATGTGTCCAGATAAGACGCCAATCTCATCGCAGAGCCGCCATTCGCAGAAGACTCGACCTCGCCCTGCAGCTTTATCAGCAGCACATGGAGGAACCACCCACCATAGGCCTTGACCCTCCAATCATCGCGGCACTGCCTGTTTTCGTTGTCGAATCGAAGGTTCGAGAAGATGGTGGTGGTGGTGTGATGGATTGTGCTGTTTGCTTGAGTGCTTTAGAAGATGAAGAAATGGCCAAGTTGCTTCCTAACTGCAAGCATTATTTCCATGTTGCTTGTATAGATACTTGGTTGGCTTTGCATTGCACGTGCCCCTTGTGTCGAACCACGGTCCAACCACGGCTTGAGCCGCATCTCCGTGAGGGTCCCACTGCACTCGCTCTTGATGCTGGACCCTTGGAATCGGTGGTTCTGGAAGAAACTTCTGATGGTGATCATGGTGGTGTTGGTGAGTCGCCCAGAATTAATGATGATGATGATGGTTCGAATTCAAGGTTGGGCTCGTTCCGAAGGGTTCTCAGTAAGGATAGATCGTCAAGAAGAATAGCCCAAGTCCAACCGTCTGATGTTCATCAAGATTTGGAGCGACAGACAGTGAATTTGTAG | 693 | 0.4762 | MNRKIMFIYISMLSLSMVSVIFFSFYLYTKCVQIRRQSHRRAAIRRRLDLALQLYQQHMEEPPTIGLDPPIIAALPVFVVESKVREDGGGGVMDCAVCLSALEDEEMAKLLPNCKHYFHVACIDTWLALHCTCPLCRTTVQPRLEPHLREGPTALALDAGPLESVVLEETSDGDHGGVGESPRINDDDDGSNSRLGSFRRVLSKDRSSRRIAQVQPSDVHQDLERQTVNL. | 231 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g04826 | 230 | CDD | RING-H2_EL5-like | 94 | 137 | - | - | |
Seca4g04826 | 230 | MobiDBLite | consensus disorder prediction | 169 | 207 | - | - | |
Seca4g04826 | 230 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 15 | 219 | - | - | |
Seca4g04826 | 230 | MobiDBLite | consensus disorder prediction | 169 | 230 | - | - | |
Seca4g04826 | 230 | ProSiteProfiles | Zinc finger RING-type profile. | 95 | 137 | IPR001841 | - | |
Seca4g04826 | 230 | SMART | ring_2 | 95 | 136 | IPR001841 | - | |
Seca4g04826 | 230 | FunFam | E3 ubiquitin-protein ligase ATL6 | 55 | 143 | - | - | |
Seca4g04826 | 230 | SUPERFAMILY | RING/U-box | 80 | 143 | - | - | |
Seca4g04826 | 230 | Pfam | Ring finger domain | 94 | 137 | IPR001841 | - | |
Seca4g04826 | 230 | MobiDBLite | consensus disorder prediction | 208 | 230 | - | - | |
Seca4g04826 | 230 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 54 | 143 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g04826 | Seca-Chr4 | 89994734 | 89995426 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g04826 | 1 | 226 | C3H Transcription Factor Family | AT2G42360 | 40.870 | 5.96e-42 | 140 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g04826 | K19038 | - | gmx:100783358 | 205.682 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca4g04826 | 4 | 89994734 | 89995426 | Seca4g04826 | 4 | 89994734 | 89995426 | ECH |