Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04826 ATGAACAGAAAGATAATGTTCATATATATATCCATGCTTTCCTTGTCAATGGTCTCTGTTATTTTCTTCTCCTTTTACCTCTACACAAAATGTGTCCAGATAAGACGCCAATCTCATCGCAGAGCCGCCATTCGCAGAAGACTCGACCTCGCCCTGCAGCTTTATCAGCAGCACATGGAGGAACCACCCACCATAGGCCTTGACCCTCCAATCATCGCGGCACTGCCTGTTTTCGTTGTCGAATCGAAGGTTCGAGAAGATGGTGGTGGTGGTGTGATGGATTGTGCTGTTTGCTTGAGTGCTTTAGAAGATGAAGAAATGGCCAAGTTGCTTCCTAACTGCAAGCATTATTTCCATGTTGCTTGTATAGATACTTGGTTGGCTTTGCATTGCACGTGCCCCTTGTGTCGAACCACGGTCCAACCACGGCTTGAGCCGCATCTCCGTGAGGGTCCCACTGCACTCGCTCTTGATGCTGGACCCTTGGAATCGGTGGTTCTGGAAGAAACTTCTGATGGTGATCATGGTGGTGTTGGTGAGTCGCCCAGAATTAATGATGATGATGATGGTTCGAATTCAAGGTTGGGCTCGTTCCGAAGGGTTCTCAGTAAGGATAGATCGTCAAGAAGAATAGCCCAAGTCCAACCGTCTGATGTTCATCAAGATTTGGAGCGACAGACAGTGAATTTGTAG 693 0.4762 MNRKIMFIYISMLSLSMVSVIFFSFYLYTKCVQIRRQSHRRAAIRRRLDLALQLYQQHMEEPPTIGLDPPIIAALPVFVVESKVREDGGGGVMDCAVCLSALEDEEMAKLLPNCKHYFHVACIDTWLALHCTCPLCRTTVQPRLEPHLREGPTALALDAGPLESVVLEETSDGDHGGVGESPRINDDDDGSNSRLGSFRRVLSKDRSSRRIAQVQPSDVHQDLERQTVNL. 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04826 230 CDD RING-H2_EL5-like 94 137 - -
Seca4g04826 230 MobiDBLite consensus disorder prediction 169 207 - -
Seca4g04826 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 15 219 - -
Seca4g04826 230 MobiDBLite consensus disorder prediction 169 230 - -
Seca4g04826 230 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Seca4g04826 230 SMART ring_2 95 136 IPR001841 -
Seca4g04826 230 FunFam E3 ubiquitin-protein ligase ATL6 55 143 - -
Seca4g04826 230 SUPERFAMILY RING/U-box 80 143 - -
Seca4g04826 230 Pfam Ring finger domain 94 137 IPR001841 -
Seca4g04826 230 MobiDBLite consensus disorder prediction 208 230 - -
Seca4g04826 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 143 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04826 Seca-Chr4 89994734 89995426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04826 1 226 C3H Transcription Factor Family AT2G42360 40.870 5.96e-42 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04826 K19038 - gmx:100783358 205.682
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04826 4 89994734 89995426 Seca4g04826 4 89994734 89995426 ECH