Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04825 ATGTCCCACCAAAATCACCAAACCATAGACCAAAGAAGGGTCATGAAGACCAGTGGAGGAGGAGAGATAGTTGAAGTAGAAGGAGGGCACATTATTCGACCAATAGGTCGAAAAGATCGCCATAGCAAGGTTTACACTTCAAAAGGTCCTCGTGATCGCAGGGTAAGACTCTCAGCTCACACTGCCATTGAGTTCTATGATGTTCAAGATCGTCTTGGCTATGATCGACCCAGTAAAGCTGTGGATTGGCTCATCAAGAAAGCAAAACCTTCCATTGACCAGCTTGCTGAGCTTCCACCATGGAATCTATCTGCCACAGCTCAAATCCTTGAAGAATCAGAAGAATATCAGCAGAATGATGCTGCTGGAGGCTTAACTGGAAATGGCATGCTCATTGGAGAACCATCACAATCTTCAGCTGATTACAATTTTCAGCTCCAAATGCAATTAGGTGATAATAGCCAACACCACCAGGAGGGTAATAATGCTCATCATTCTGCCTTTGTTTCACCACATGTTGATACAACTGACCCTCCTATTGCTTTCTTTCCCACAAACTCTTCTACTTCTTCCTCCATCAATTTTCACACCTACCCACCTGATATTATCCCCAGAACAGACATTTCCACTGAAAATCTTGGCCTTTCTCTTCATTTGTTCCAAGATCACCCTGGTTTGATTCCTTGGCAATCACAACAACAAGGTGAAACTGAAAACCATGCAATACCTTCAAATGAGCAACAAACCCTTTTTGCTGGCTTAACCCCTGTTGGGTTTGACAATAATTATCAGAGAATGGTGACTTGGAACAATGAAACAACCACTGATCATGTCAACAAAGTGGGGTTCATGGTAAACCCACAGCCATATCTTGGTTCAGGTTCTTCAGAGTATTCTCCAAGTGGGACCCTTCAGTCCAGTTTCTCACCTTCAGTTCGGTCTTGGGGTGACATTCCAATGGCTTCCTCAGAGCTTCACAGGTCTCAACCAGTTCACCAATCTTCCATCTTTGGTAGCAGGTTTCTGTCTCAGGGATTTGTTGGGTTTGACATTCCAGAAAGAATTCAAGGTGAGGAGCAGATAGAAAAGAACCATGGTGTTGCTTCCAACAGACCATCTTCTTATTCTCCTACACACAATTGA 1143 0.4366 MSHQNHQTIDQRRVMKTSGGGEIVEVEGGHIIRPIGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKPSIDQLAELPPWNLSATAQILEESEEYQQNDAAGGLTGNGMLIGEPSQSSADYNFQLQMQLGDNSQHHQEGNNAHHSAFVSPHVDTTDPPIAFFPTNSSTSSSINFHTYPPDIIPRTDISTENLGLSLHLFQDHPGLIPWQSQQQGETENHAIPSNEQQTLFAGLTPVGFDNNYQRMVTWNNETTTDHVNKVGFMVNPQPYLGSGSSEYSPSGTLQSSFSPSVRSWGDIPMASSELHRSQPVHQSSIFGSRFLSQGFVGFDIPERIQGEEQIEKNHGVASNRPSSYSPTHN. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04825 380 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 347 IPR005333 GO:0003700
Seca4g04825 380 MobiDBLite consensus disorder prediction 360 380 - -
Seca4g04825 380 MobiDBLite consensus disorder prediction 366 380 - -
Seca4g04825 380 ProSiteProfiles TCP domain profile. 37 95 IPR017887 -
Seca4g04825 380 Pfam TCP family transcription factor 37 153 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04825 Seca-Chr4 89960249 89964153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04825 19 376 TCP Transcription Factor Family AT3G15030 41.294 5.94e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca4g04825 TCP 1.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04825 - - gmx:100814907 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04825 4 89960249 89964153 Seca4g04825 4 89960249 89964153 ECH