Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04815 ATGGCATTTGAGGAACATGGGTTCACTAAGGAAGTGTTGAATATTGTTTCAAAGTTTGTCAAAGGTACCGTTTCAGAAATTCAGGAGAGGTATAAATATCTTAAGGAAAAGAACATGAGGAGGTTGGACCAGCATTCTAAAGATTCTGGAGAACATGAATCTCTTATTGGCATATCTTTGGATAAAAGCTTGAATGATGCTTTGGATACTTTTGATAGACTTTTTTGCCGCCAGTGCATTCAAATCTTTGATTGTCCCCAGCATGGCTGTTCAAAACCTATATATCTTAGTGAAAAGCAGAAAGTATGGTCTGAACCTGAAGGTGACAGGAAACCGTGCAATAATCGTTGTTACCTTCAGTCACCTGATTCAATGGAAGTGCAAGTTGATGAGAAGTGCTTCTCAAATTGGAAACCTCTAGAGAAAGATTTATATTTGAAGGGAGTAGAAATATTTGGGAGAAATAGTTGCCTTATAGCACGAAACTTACTTTCTGGCTTGAAGACCTGCATGGAAGTAGCTAGCTACATGTATGCTGCAGAAGTATCAATGCCCAACAAATCCATACTAAGTTCAATCATGGACAAAAATGGAAAAATTGATGCAGAGTGCCCAGACCGAGAGATGGAATCAGGGTCACGGTTGCTACGAAAAAGGCGCAAAACTAGGAAGTTGAAATATTCTTTCAAGTCTTCTCGCCTCTCATCTACATGGAAAAGAATTACTGCTAGAAAAAGTAAAACTTACAAGCAGTATACACCTTGTGGATGCCAGGGAATGTGTGGAAAGCAATGTTCTTGTCTTCAAAATGGATCCTGCTGTGAAAAATATTGTGGGTGTTCAACGCTATGTGGAAATCGGTTCAGAGGATGTTACTGTGCTAAGAGTCAATGCAGAAGTCGACAATGTCCATGCTTTGCAGCAAACCGAGAATGTGACCCAGATGTCTGTCGAAATTGTTGGGTTAGTTGTGGCAGTGGTTCATTAGGAGAGCCACCTAGACGTGGAGATGGTCAATGTGAAAATATGAGGCTTCTTTTAAGGCAAAAGCAGAGGATTATTTTGGCAAAGTCTGATATTGCAGGATGGGGAGCCTTCTTAAAGAACCCAGCTAACAAGAATGATTACCTGGGAGAGTACACGGGTGAACTGATATCTCAATCAGAAGCAGACAAGCGTGGGAAAATTTATGATCGTGCAAACTTTTCTTTCCATTTTAACTTGAATAATCAGGCAAGTGTCTATTTAATGTATGTCATTGATGCTTATCGCAAAGGAGACAAGTTGAAATTTGCTAACCACTCAAAAAAACCCAACTGTTATGCAAAGATTATGTTTGTTGATGGGGATCATCGAGTAGGCATATTTGCCAAGAAACGCATTAAAGCTGGTGAGGAGCTTTTCTACGATTATTGCTACAGGCCAGAGCAAGCACCAGCGTGGTTTTAA 1449 0.4003 MAFEEHGFTKEVLNIVSKFVKGTVSEIQERYKYLKEKNMRRLDQHSKDSGEHESLIGISLDKSLNDALDTFDRLFCRQCIQIFDCPQHGCSKPIYLSEKQKVWSEPEGDRKPCNNRCYLQSPDSMEVQVDEKCFSNWKPLEKDLYLKGVEIFGRNSCLIARNLLSGLKTCMEVASYMYAAEVSMPNKSILSSIMDKNGKIDAECPDREMESGSRLLRKRRKTRKLKYSFKSSRLSSTWKRITARKSKTYKQYTPCGCQGMCGKQCSCLQNGSCCEKYCGCSTLCGNRFRGCYCAKSQCRSRQCPCFAANRECDPDVCRNCWVSCGSGSLGEPPRRGDGQCENMRLLLRQKQRIILAKSDIAGWGAFLKNPANKNDYLGEYTGELISQSEADKRGKIYDRANFSFHFNLNNQASVYLMYVIDAYRKGDKLKFANHSKKPNCYAKIMFVDGDHRVGIFAKKRIKAGEELFYDYCYRPEQAPAWF. 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04815 482 SUPERFAMILY SET domain 247 476 IPR046341 -
Seca4g04815 482 CDD SET_EZH 351 473 - -
Seca4g04815 482 FunFam Putative histone-lysine N-methyltransferase EZH2 252 474 - -
Seca4g04815 482 Pfam SET domain 362 471 IPR001214 GO:0005515
Seca4g04815 482 ProSiteProfiles SET domain profile. 351 472 IPR001214 GO:0005515
Seca4g04815 482 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 1 120 IPR045318 GO:0006338|GO:0042054
Seca4g04815 482 SMART CXC_2 286 323 IPR033467 -
Seca4g04815 482 Pfam CXC domain 290 321 IPR041355 -
Seca4g04815 482 SMART set_7 351 478 IPR001214 GO:0005515
Seca4g04815 482 Gene3D SET domain 252 473 IPR046341 -
Seca4g04815 482 ProSiteProfiles CXC domain profile. 238 337 IPR026489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04815 Seca-Chr4 89727219 89730263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04815 340 475 C2H2 Transcription Factor Family AT2G23740 29.252 5.17e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca4g04815 SET 9.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04815 - K11430 cam:101494145 615.535