Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04813 ATGGAAATGGAAGCATTTAATTGGGGCTCTGGCATTCATGGAGATGCCATTTCTGATGATTTTCAAGTAAACAATGCGGTAATTGGAAGTGGGTATGGTTCATCTTTCTCTCTGATTTTGGATAGGGAGAGAGGGGAGCTTGTGGAGGCGCCTTCCAAATTGGAACGAAAGGGTGTGTCCACTGAGAGAAGCATTGAAGCTTTGAAGAGCCATAGTGAGGCAGAGAGGAGGAGGAGAGCCAGGATTAATGCACATCTTGATACACTTCGCACTGTGATTCCAGGTGCTAATAAGATGGATAAAGCATCATTACTTGGTGAGGTTCTTAGACATTTGAAAGAGCTGAAAAGGAATGCAGCACAAGCTTGTGAAGGTGTAATGATACCAAAGGACAGTGATGAAATAAGTGTTGAAGAACAAGAGGGTGGGCTCAATGGCTTTCCTTATTCAATTAGAGCATCACTATGCTGTGAATATAAACCTGGGTTATTGTCTAATATAAGACAAGCACTGGATGCTCTTCATCTTATGATAATCAAGGCTGATATTGCAACATTGGGAGGCAGAATGACGAATGTCTTTGTGATAATTAGCTGCAAAGAACAGAACTTTGAAGATGCTGAATACCGTCAGTTTCTTGCTGGTTCTGTTCATCAAGCTCTTAGATCTGTACTCAATAGGTTTTCTGTTTCAGAGGACATCTTAGGAACCAGAAAAAGAAGGAGGATTTCTATATTCAGTTCAACATTTTTAGAAGATATCTTGTAA 768 0.4049 MEMEAFNWGSGIHGDAISDDFQVNNAVIGSGYGSSFSLILDRERGELVEAPSKLERKGVSTERSIEALKSHSEAERRRRARINAHLDTLRTVIPGANKMDKASLLGEVLRHLKELKRNAAQACEGVMIPKDSDEISVEEQEGGLNGFPYSIRASLCCEYKPGLLSNIRQALDALHLMIIKADIATLGGRMTNVFVIISCKEQNFEDAEYRQFLAGSVHQALRSVLNRFSVSEDILGTRKRRRISIFSSTFLEDIL. 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04813 255 Gene3D - 61 123 IPR036638 GO:0046983
Seca4g04813 255 SUPERFAMILY ACT-like 154 225 IPR045865 -
Seca4g04813 255 PANTHER TRANSCRIPTION FACTOR BHLH30 42 244 IPR045847 GO:0003700|GO:0006355
Seca4g04813 255 Pfam Helix-loop-helix DNA-binding domain 70 115 IPR011598 GO:0046983
Seca4g04813 255 SMART finulus 72 121 IPR011598 GO:0046983
Seca4g04813 255 CDD ACT_UUR-ACR-like 154 225 - -
Seca4g04813 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 121 IPR036638 GO:0046983
Seca4g04813 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 115 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04813 Seca-Chr4 89531606 89533975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04813 39 244 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 38.636 2.34e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g04813 HLH 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04813 - - gmx:100788819 411.764