Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04795 ATGGTCGACACTGTAATGGGGATCCTCACACTTCCTCGCCATAGGCTTCCTATAGTTATCATTCAGTTCGCAAGGATAAACATCTATAAGGGTGGGTCCTACAATCTCAGAATCTTCCTCATGTTATTTTCAATAATGTTGTATACCCATTTGCGCTATATGGTGATGCCGATTGGGAGATTGAATGATCCTTATTTTGCAGGAGAAGTTGGAATCCAGAATCTGATGAATGCTTCCAAGGTGCTATGGAACCCAAAAATACCAGAGGCCATTGAGTTCAAAAATTGCCTAGCTGTCCATGAGGTCGAGACAGATCTTCAGATTGGAACAATATCTGACCGAGGGAGGCCTGCTTCCATTAAGGATGAGTTCCTCAAACTGTATCCTAGGAAGTCTTTGTATGACCTACTGCAGACAAATGAGGAGGGATGCTTCATCATTCTAGGAACTGTTGACGAAGTTATGCAGGAATCTTTGTGGTGGTACATGGCGTGCAAGTGCATGAAGGCAGTTTCCTACGATGACGGGGTTCCTTACTGCGAGGATTGTGATGTCTATGTTCCAGACTGTACTCCAAGGTACAAGGTAAAGCTTGCCGTCTCCGACGGATCTGATAGCGTTAGTTTGATCCTTTTCGACTCCGAGTGCTACTCATTGCTGGGCAAGTCGTGTCGTGATCTGTTATCGGAGAAGAGGTGCACTCAGACATGTCCTTACCCTGCTGCTATAATGGAATTCATTGGACATGAGTTCCTATTTCGAGTTGAGGTCAAAGATGATGTTGTATACTCATTTGATGAGTGCTTCAGGGTGCGACGAGTTTCATCTGAACCCACACTGATTCGAGAGTACACTGAAGGATTAGAGGAGGAAACACCACTTAAGTTAAAGTTTGCACCCAGTTTTACCAAGAATGATACGTCTGAGGGGTCAAGCACTGCCATGCATATGTCTCCTATCTGCAATGCTCCTGTCACTGAAATAGATGTTAGCCCATTTTCAAATGATCCCTCGCCATCTGTTGGTGAAGACAGTGGGAGTGCACCGAAGAGGGAACCTGAGCATGCAGCGGAATCTGCCACTAAGAGGAAGAAACGGGCCAGGGGGAAGCCCGCCAAAGTGGAAAGAACCTGA 1134 0.4586 MVDTVMGILTLPRHRLPIVIIQFARINIYKGGSYNLRIFLMLFSIMLYTHLRYMVMPIGRLNDPYFAGEVGIQNLMNASKVLWNPKIPEAIEFKNCLAVHEVETDLQIGTISDRGRPASIKDEFLKLYPRKSLYDLLQTNEEGCFIILGTVDEVMQESLWWYMACKCMKAVSYDDGVPYCEDCDVYVPDCTPRYKVKLAVSDGSDSVSLILFDSECYSLLGKSCRDLLSEKRCTQTCPYPAAIMEFIGHEFLFRVEVKDDVVYSFDECFRVRRVSSEPTLIREYTEGLEEETPLKLKFAPSFTKNDTSEGSSTAMHMSPICNAPVTEIDVSPFSNDPSPSVGEDSGSAPKREPEHAAESATKRKKRARGKPAKVERT. 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04795 377 MobiDBLite consensus disorder prediction 347 361 - -
Seca4g04795 377 Pfam Replication factor-A C terminal domain 145 261 IPR013955 -
Seca4g04795 377 MobiDBLite consensus disorder prediction 328 342 - -
Seca4g04795 377 SUPERFAMILY Nucleic acid-binding proteins 128 271 IPR012340 -
Seca4g04795 377 CDD RPA1_DBD_C 135 261 IPR047192 -
Seca4g04795 377 MobiDBLite consensus disorder prediction 327 377 - -
Seca4g04795 377 Gene3D - 121 288 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04795 Seca-Chr4 89302659 89304288 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04795 79 257 Core DNA Replication Machinery Family AT5G08020 26.562 2.39e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04795 - - lja:Lj3g3v3527180.1 205.297