Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04794 ATGTGTTCACCAGCGAGGAGGGTCGATTTCAGCGTGGGTGACAAAGTGGAGGTGTCTATCAACGAAGAAGGGTTTTGGGGTTCTTACTATGAAGGCACTATTGTGTCCCCACTTGATGAGAATGGACGCTACATGGTGCGCTACAAGAACCTTCTCGAAGATGATATTTCTAAGCCTCTCACAGAGCCTATTCTGCCCAAATATCTTCGACCCAAACCACCTCGTGTTCGCGTTGAGGAGTACAAGGTGTATTCCTACGTCAATGCTTTTCATAACGATGGTTGGTGGTATGGTCAGATCACTAGGCAAAAGAGCGAATCTCACTACTATGTCTACTTCAAAACCACAAATGAAGAGATTCCCTACCATATCTCTCGTATCAGGGTTCACCAAGAGTGGGCTAATGGGGTATGGATTGTGTTCTGA 426 0.4601 MCSPARRVDFSVGDKVEVSINEEGFWGSYYEGTIVSPLDENGRYMVRYKNLLEDDISKPLTEPILPKYLRPKPPRVRVEEYKVYSYVNAFHNDGWWYGQITRQKSESHYYVYFKTTNEEIPYHISRIRVHQEWANGVWIVF. 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04794 141 SMART agenet_At_2 8 77 IPR014002 -
Seca4g04794 141 SMART agenet_At_2 79 135 IPR014002 -
Seca4g04794 141 Gene3D - 5 61 - -
Seca4g04794 141 Pfam Agenet domain 13 74 IPR008395 -
Seca4g04794 141 CDD Tudor_Agenet_AtDUF_rpt2_4 87 129 - -
Seca4g04794 141 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 9 139 - -
Seca4g04794 141 CDD Tudor_Agenet_AtDUF_rpt1_3 10 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04794 Seca-Chr4 89263037 89263462 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04794 22 138 PHD Transcription Factor Family AT5G58610 29.078 1.48e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04794 - - gmx:121175082 180.259