Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04793 ATGTGTCCACCAGCGAGGAGGGTCGATTTCAGCGTGGGTGACAAAGTGGAGGTGTCTATCAACGAAGAAGGGTTTTGGGGTTCTTACTATGAAGGCACTATTGTGTCCCCACTTGATGAGAATGGATGCTACATGGTGCGCTACAAGAACCTTCTCGAAGATGATAGCTCTAAGCCTCTCATAGAGCCTATTCTGCCCAAATATCTTCGACCCAAACCACCTCGTGTTCGCGTTGAGGAGTACAAGGTGTATTCCTACGTCAATGCTTTTGATAACGATGGTTGGTGGTATGGTCAAATAACTAGGCAAAAGAGCGAATCTCACTACTATGTCTACTTCAAAACCACAAATGAAGAGATTCCCTACCATATCTCTCGTATCAGGGTTCACCAAGAGTGGGCTCATGGGGTATGGATTGTGTTCTGA 426 0.4601 MCPPARRVDFSVGDKVEVSINEEGFWGSYYEGTIVSPLDENGCYMVRYKNLLEDDSSKPLIEPILPKYLRPKPPRVRVEEYKVYSYVNAFDNDGWWYGQITRQKSESHYYVYFKTTNEEIPYHISRIRVHQEWAHGVWIVF. 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04793 141 SMART agenet_At_2 8 77 IPR014002 -
Seca4g04793 141 SMART agenet_At_2 79 135 IPR014002 -
Seca4g04793 141 Pfam Agenet domain 13 74 IPR008395 -
Seca4g04793 141 CDD Tudor_Agenet_AtDUF_rpt1_3 10 74 - -
Seca4g04793 141 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 9 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04793 Seca-Chr4 89246064 89246489 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04793 22 133 PHD Transcription Factor Family AT5G58610 28.358 9.57e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04793 - - gmx:106794115 187.578