Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04776 ATGGACTCCGACGCCGGAGCTCCGTCGCCTGCCGCCCTCGCTCAGCCGCGTCCTCCGTCGTCGGTGTCGCCGTTCCCCGGTCGGGAAGACTGCTGGAGCGAGGACGCCACCTTCACCCTCATCGACGCCTGGGGTGACCGCTACCTCGACCTCAACCGCGGCAACCTCCGTCAGAAGCACTGGCAGGAGGTCGCCGACGCCGTCAACGACAGCCACGCCGCCGTCGCCGCCGGCAACAAGAAAGCGCACCGAACCGACGTCCAGTGCAAGAACCGAATCGACACGCTCAAGAAGAAGTACAAGATCGAGAAGGCTAGGGTTTCCGAATCAGACGGCACTTACCGGAGCCCCTGGCCCTTCTTTTCCCGCCTTGACGCCCTCATCGGCGACACTTTTCCGGTCAAAAAACTCTCGCCGCCGGCCACCGCTGCCAAGCCGCCTCCGCCGGCATGGATTACCTCACACCCTGTCGGTCCCCGATCCGGGACTCAGAAACGTCCGGCGACGGCGTTGTCGGCGCCGGCCAGGGAGGACTCGTTGTTCCGCCGGAATTTCTCGGCTTTCGCCGCCGCCGCGGCTGCTGCTGCAGAGGCTGAAAGCGGCGAGTCTGAGGAATGGAGGTCGAGCAGTGGCACTGGGAGTGGGAAGAGGGGAAGAGAGAGTGATAACAAAGATTTGGAATTTGGGTGTAGAGAGCTCGCTCAGGCCATAGAGAGGTTTGGAGAGATATATGAGAGAGTGGAGGCGCAAAAACAGAGGCAAATGGTAGAGTTGGAGAAGCAGAGGATGCAGTTTGCAAAAGATTTGGAGTACCAGAGGATGCAACTCTTCATGGAAACTCAAGTTCAGCTGCAGAAAATCAAACGCACCAAGCGATCAGGAGCTGCGGAGTTGCAGTTTTCGTTTACATATGAGTTTGATTAA 924 0.5931 MDSDAGAPSPAALAQPRPPSSVSPFPGREDCWSEDATFTLIDAWGDRYLDLNRGNLRQKHWQEVADAVNDSHAAVAAGNKKAHRTDVQCKNRIDTLKKKYKIEKARVSESDGTYRSPWPFFSRLDALIGDTFPVKKLSPPATAAKPPPPAWITSHPVGPRSGTQKRPATALSAPAREDSLFRRNFSAFAAAAAAAAEAESGESEEWRSSSGTGSGKRGRESDNKDLEFGCRELAQAIERFGEIYERVEAQKQRQMVELEKQRMQFAKDLEYQRMQLFMETQVQLQKIKRTKRSGAAELQFSFTYEFD. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04776 307 MobiDBLite consensus disorder prediction 140 154 - -
Seca4g04776 307 FunFam trihelix transcription factor ASIL2 32 102 - -
Seca4g04776 307 MobiDBLite consensus disorder prediction 199 223 - -
Seca4g04776 307 Coils Coil 244 264 - -
Seca4g04776 307 MobiDBLite consensus disorder prediction 138 175 - -
Seca4g04776 307 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 20 291 IPR044823 -
Seca4g04776 307 MobiDBLite consensus disorder prediction 1 28 - -
Seca4g04776 307 Gene3D - 32 102 - -
Seca4g04776 307 Pfam Myb/SANT-like DNA-binding domain 29 127 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04776 Seca-Chr4 88709169 88713252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04776 182 289 Trihelix Transcription Factor Family AT3G14180 37.500 4.40e-15 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca4g04776 Myb_DNA-bind_4 5.1e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04776 - - lang:109355153 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04776 4 88709169 88713252 Seca4g04776 4 88709169 88713252 ECH