Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04771 ATGGCATCAGAAAGAAATTACAACATATCTGAAGAAAACAAGATCAGGGAAGGGTCTTCTCAAAGTTCAAAAAAGCGTTCCTTGTTGGACTTAAATGAAGAAGCTGAAGATGATGAAGTAAAGGGTGATGAGAATGAGAGGTTATCTACTAATTCAGAAGGTAATTTGAAGTCGAGTGGAAGTGCAGAAGAAGAAGGGAAAGAGAGTGGAGGTGGAGTTAGGCAGTATGTGAGGTCCAAAATGCCAAGGCTCCGTTGGACTCATGATCTCCATCTAGCTTTTGTGCGTGCTGTTCACAAGCTTGGTGGTCAGGAAAGAGCAACACCCAAGTTAGTACTCCAGTTAATGAATGTGAGGGGACTTAGTATTGCACATGTAAAGAGTCATTTGCAGATGTATCGAAGTAAAAAGCTTGATGGATCTGGCCAAGTTTTGTCCAAACATAGGGCAATGCAAGGAAAACAACAAATTTATGAGATGTACCAAAAACTTAATGTCCAAGGGCACTTTGGGGTTGATAACAAAAATTATCTACCATCATCACCTTTGCTAATAAAACAACCATATGGATTCAAAGCTCATGGATCTTCAAGATTTCAGCAGGTTGGACTTTTTGATAGTCACACGACTAGATCAAGATCATCATGTGAGGCCCCTAACTATAGAACCTTCCTTCAAAGGAACGAAAGGATGGCGAGCTCACACCTATTTCATGCAACAACAAGAAATGAACCTGTTGCAATACCATCTCCTTGGAGCGTCAATGCTAGTTCTTGGGGTACAATCTTCCATGGCCATGCGAAGCTTGGTGCTGAGGTCCAAGATCTAAAAGCTGAAATGCAATTCACAAATGAGGTTCAGGTCAAAGAACACTCCGAAAGATTGGAGGAGAACAAAGGGTCAGCAAATTTGCTAGAGCTAAGGTTATTAAGTCACGATTTAGGAAACCTTGGAGAGACAAATAATGGTGGTCTAGAAAGTGAACAAGAAACCAATACAATGCTATCTCTTTCGTTGTTCCCTTCCTCATCATCAATGGAACAAGCTCAATGTTATGAAAAACACATTAATACATAG 1077 0.4048 MASERNYNISEENKIREGSSQSSKKRSLLDLNEEAEDDEVKGDENERLSTNSEGNLKSSGSAEEEGKESGGGVRQYVRSKMPRLRWTHDLHLAFVRAVHKLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDGSGQVLSKHRAMQGKQQIYEMYQKLNVQGHFGVDNKNYLPSSPLLIKQPYGFKAHGSSRFQQVGLFDSHTTRSRSSCEAPNYRTFLQRNERMASSHLFHATTRNEPVAIPSPWSVNASSWGTIFHGHAKLGAEVQDLKAEMQFTNEVQVKEHSERLEENKGSANLLELRLLSHDLGNLGETNNGGLESEQETNTMLSLSLFPSSSSMEQAQCYEKHINT. 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04771 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 138 IPR017930 -
Seca4g04771 358 SUPERFAMILY Homeodomain-like 80 136 IPR009057 -
Seca4g04771 358 Pfam Myb-like DNA-binding domain 84 134 IPR001005 -
Seca4g04771 358 MobiDBLite consensus disorder prediction 1 75 - -
Seca4g04771 358 NCBIfam myb-like DNA-binding domain, SHAQKYF class 82 137 IPR006447 GO:0003677
Seca4g04771 358 Gene3D - 81 138 - -
Seca4g04771 358 FunFam Myb family transcription factor 80 138 - -
Seca4g04771 358 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 55 192 IPR046955 GO:0003700
Seca4g04771 358 MobiDBLite consensus disorder prediction 9 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04771 Seca-Chr4 88548427 88553105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04771 73 150 G2-like Transcription Factor Family AT2G42660 69.880 6.66e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca4g04771 Myb_DNA-binding 2.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04771 - - lang:109337615 293.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04771 4 88548427 88553105 Seca4g04771 4 88548427 88553105 ECH