Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04769 ATGTCGGGTGTTGGATCTATTTCTCAGGATTGGGAACCTGTCGTCCTCCGCAAGAAAGCACCTACCGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGCCGTTCCGGTGCAGACATCGAAACCGTTAAGAAATATAATGCTGGGACAAACAAAGCTGCCTCTAGCAGCACTTCATTGAACACTAAGAGGCTGGACGACGATACAGAGAATCTAGCTCATGAGCGTGTACCAACTGAACTCAAGAAAGCTATAATGCAAGCTAGGACGGACAAGAAACTTACTCAGGCACAGCTTGCTCAGTTGATCAATGAGAAGCCTCAAGTGATCCAAGAGTACGAATCAGGGAAGGCCATTCCAAACCAGCAGATACTTGGCAAGTTGGAGAGAGCCCTTGGAGCTAAACTGCGTGGCAAGAAATAA 429 0.4965 MSGVGSISQDWEPVVLRKKAPTAAAKKDEKAVNAARRSGADIETVKKYNAGTNKAASSSTSLNTKRLDDDTENLAHERVPTELKKAIMQARTDKKLTQAQLAQLINEKPQVIQEYESGKAIPNQQILGKLERALGAKLRGKK. 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04769 142 Gene3D - 71 142 IPR010982 GO:0003677
Seca4g04769 142 SUPERFAMILY lambda repressor-like DNA-binding domains 81 138 IPR010982 GO:0003677
Seca4g04769 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Seca4g04769 142 MobiDBLite consensus disorder prediction 21 39 - -
Seca4g04769 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 9 142 - -
Seca4g04769 142 MobiDBLite consensus disorder prediction 1 39 - -
Seca4g04769 142 FunFam Multiprotein bridging factor 1 71 142 - -
Seca4g04769 142 Coils Coil 87 107 - -
Seca4g04769 142 MobiDBLite consensus disorder prediction 52 76 - -
Seca4g04769 142 CDD HTH_XRE 85 135 IPR001387 -
Seca4g04769 142 Pfam Helix-turn-helix 87 137 IPR001387 -
Seca4g04769 142 SMART mbf_short4 86 141 IPR001387 -
Seca4g04769 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04769 Seca-Chr4 88472223 88474964 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Seca4g04769 MBF1 1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04769 K03627 - gmx:100500420 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04769 4 88472223 88474964 Seca4g04769 4 88472223 88474964 ECH