Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04759 ATGGCCTCCATGCCGTTGGGGCACCACCACCAACAACCGCCACCGCAGCCGGCTACGCAACCGCAACAACCGCCGCAGTTTCAGGAAGTTCCTCGCCGGAGCTCCGATATGGAGACAGAAAAGATGCAGGAAATGTCCGCTACTGTCATTGACAGGAATGATTCAGTCACTGGCCACATAATCTCCACCACAATTGGAGGCAAGAATGGTGAACCTAAAAGGACCATCAGTTACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGGCAAAGTGCTTAGAGACGGGGGAAGCTGTAGCTATAAAAAAGGTCTTGCAAGACAAGCGGTACAAAAATCGAGAGCTGCAGTTGATGCGCTTGATGGATCACCCAAATGTAATTTCCCTGAAACATTGTTTCTTCTCTACAACAAGCAAAGATGAACTTTTTCTGAACTTGGTAATGGAATATGTTCCTGAGACACTGTATCGAGTTCTAAAGCACTACAATACTATGAACCAGAAGATGCCTCTCATCTATGTGAAACTATATACATATCAAATCTTTAGGGGATTAGCATACATCCATACCGTACCAGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTGGTTCATCCTCTTACTCACCAAGTTAAGCTTTGTGATTTCGGGAGTGCCAAAGTTCTGTATTTTTTAAAAAAATTACATCAGGTCAAGGGTGAATCAAACATCTCGTACATCTGTTCACGTTATTATCGGGCTCCAGAACTAATATTTGGTGCAACAGAATACACAACTTCTATTGATATCTGGTCAGCTGGTTGTGTCCTTGCTGAACTTCTTCTAGGCCAGCCATTATTTCCAGGAGAAAATCAAGTGGACCAACTTGTGGAAATTATTAAGGTTCTTGGTACTCCAACTCGAGAAGAAATTCGTTGCATGAACCCGAATTATACAGACTTTAGATTCCCTCAGATAAAAGCTCATCCTTGGCACAAGGTTTTCCACAAGAGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTTCGCTGCACTGCGCTGGAGGCATGTGCCCATCCTTTCTTTGATGAGCTTCGTGAACCAAATGCCCGACTACCAAATGGCCGTCCACTGCCCCCACTTTTTAACTTTAAACAGGAATTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATACCAGAGCACATTAGGCGGCAGACTGGTCTTGGTTTCCCTCAACCGGCTGCTACATAG 1281 0.4465 MASMPLGHHHQQPPPQPATQPQQPPQFQEVPRRSSDMETEKMQEMSATVIDRNDSVTGHIISTTIGGKNGEPKRTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDKRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPETLYRVLKHYNTMNQKMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVHPLTHQVKLCDFGSAKVLYFLKKLHQVKGESNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELAGASPELINRLIPEHIRRQTGLGFPQPAAT. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04759 426 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 42 415 - -
Seca4g04759 426 CDD STKc_GSK3 73 373 IPR039192 -
Seca4g04759 426 SUPERFAMILY Protein kinase-like (PK-like) 77 394 IPR011009 -
Seca4g04759 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Seca4g04759 426 Pfam Protein kinase domain 78 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04759 426 ProSiteProfiles Protein kinase domain profile. 78 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04759 426 MobiDBLite consensus disorder prediction 1 44 - -
Seca4g04759 426 ProSitePatterns Protein kinases ATP-binding region signature. 84 108 IPR017441 GO:0005524
Seca4g04759 426 FunFam Glycogen synthase kinase-3 beta 62 157 - -
Seca4g04759 426 Gene3D Phosphorylase Kinase; domain 1 63 157 - -
Seca4g04759 426 SMART serkin_6 78 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04759 426 MobiDBLite consensus disorder prediction 10 24 - -
Seca4g04759 426 Gene3D Transferase(Phosphotransferase) domain 1 158 413 - -
Seca4g04759 426 FunFam Shaggy-related protein kinase kappa 158 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04759 Seca-Chr4 88326713 88332268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04759 82 408 MAP Kinase Gene Family AT3G59790 35.174 7.82e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca4g04759 Pkinase 6.7e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04759 K14502 - gmx:100802451 751.895