Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04751 ATGAAAGCCACTAGTGATGGTGATGATGCCACTCCAATTCATGGGAGTGGAAATACAAAGGTCATGACCAACCATTCTATGTGTCGTTCAGGCCCTCCTTTGACAGCCATAGACAGGTTCTTATGGGGCCAACAAATCCATGCAAATGCAAGTATTTTTGACAATCAGATCTCAGCTTTTGCTTGTTCTGGTGCTTCAACTACATGTAGCTTTCTGTGGCCTAATAACACTCAAGAAGCAAGTAACTTTATTGATCAACTCTTAGCAAATGAAGAGTCCCTGAATTGTACACACTACCATATCCCCACATTGTGCCAGCGGAAAGAAGATATGCAAGTTTTAGGGAAGAGTAGTGTGAAGGTGGGAAGAAGGCCTAAGAAAGGATCTTCTGTGTCTTTGATCAAAGGACAATGGACTGAAGAAGAAGACAGGAAACTGTTAAAGTTGGTGAAGCAACATGGTGTAAGGAAATGGTCTCAAATAGCTGACAAGTTGGATGGAAGAGCTGGCAAGCAGTGTCGAGAGAGATGGAACAATCATCTGCGGCCTGATATTAAGAAAGATAGTTGGAGTGAAGAAGAAGAGATGATATTAGTAGAAATGCATGCCAAGATGGGAAATCGTTGGGCAGAGATTGCAAAGCGGATTCCAGGAAGGACAGAGAATGCTATAAAGAACCACTGGAATGCCACAAAGAGGAGGCTTAATTCAAAGAGAAAGAACAAAAAGACAGCAAGCTCCAATGGAAAGCCACAATCTTCTATCCTTCAAAACTATATTAGAAGCAAGACTCAAACTAGCTCCACAACAACAATCTCTGACTCTAACCCTGCTGCAACAGAACAATCCCACCTTCAGCTCTCTGATTCTGTTACCAATGACAATTTCTCATCACCAATAATAGCTGATCACCCATATGATGGCGATGATGAGTTACTCTTCATGCAACAACTTTTCAAGGACAATCTGACCCAACAGCAACCACTTGTCACTGATCAGAATGGGTTTATTCATTCCAATGCTAAGCCAAACTCATATAACAATGTGTACTTGGATGAGAGTCTTATTCTTAGAAAGACTCCTCCCACCCCCACCATCAATTCTGATCATGTCTATCTTTCTCACTTGCTGAATGGAACTGCCACTTCATCACTTTGCTATAATTATGGGATTCAGTACCAGAACATGGACTTGCAATTGGGGGATCAAAATTCTTCAGATGGAAAGAAAGAGATGGATTTGATAGAGTTGGTTTGTTCTGCTCAGTTTTTCCACTAG 1278 0.4147 MKATSDGDDATPIHGSGNTKVMTNHSMCRSGPPLTAIDRFLWGQQIHANASIFDNQISAFACSGASTTCSFLWPNNTQEASNFIDQLLANEESLNCTHYHIPTLCQRKEDMQVLGKSSVKVGRRPKKGSSVSLIKGQWTEEEDRKLLKLVKQHGVRKWSQIADKLDGRAGKQCRERWNNHLRPDIKKDSWSEEEEMILVEMHAKMGNRWAEIAKRIPGRTENAIKNHWNATKRRLNSKRKNKKTASSNGKPQSSILQNYIRSKTQTSSTTTISDSNPAATEQSHLQLSDSVTNDNFSSPIIADHPYDGDDELLFMQQLFKDNLTQQQPLVTDQNGFIHSNAKPNSYNNVYLDESLILRKTPPTPTINSDHVYLSHLLNGTATSSLCYNYGIQYQNMDLQLGDQNSSDGKKEMDLIELVCSAQFFH. 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04751 425 FunFam Transcriptional activator Myb isoform A 134 187 - -
Seca4g04751 425 CDD SANT 138 181 IPR001005 -
Seca4g04751 425 ProSiteProfiles Myb-like domain profile. 130 181 IPR001005 -
Seca4g04751 425 PANTHER MYB PROTEIN-RELATED 115 261 - -
Seca4g04751 425 ProSiteProfiles Myb-like domain profile. 182 232 IPR001005 -
Seca4g04751 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 236 IPR017930 -
Seca4g04751 425 SMART sant 134 183 IPR001005 -
Seca4g04751 425 SMART sant 186 234 IPR001005 -
Seca4g04751 425 MobiDBLite consensus disorder prediction 222 286 - -
Seca4g04751 425 SUPERFAMILY Homeodomain-like 132 228 IPR009057 -
Seca4g04751 425 CDD SANT 189 232 IPR001005 -
Seca4g04751 425 Gene3D - 134 186 - -
Seca4g04751 425 MobiDBLite consensus disorder prediction 246 286 - -
Seca4g04751 425 Gene3D - 188 257 - -
Seca4g04751 425 MobiDBLite consensus disorder prediction 231 245 - -
Seca4g04751 425 MobiDBLite consensus disorder prediction 1 25 - -
Seca4g04751 425 Pfam Myb-like DNA-binding domain 138 196 - -
Seca4g04751 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 185 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04751 Seca-Chr4 88275518 88277281 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04751 30 421 MYB Transcription Factor Family AT5G58850 39.211 1.90e-78 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g04751 Myb_DNA-bind_6 1.5e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04751 K09422 - gmx:100786295 398.282