Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04744 ATGCAAGTTTTAGGGAAGAGTAGTGTGAAGGTGGGAAGAAGGCCTAAGCAAGGATCTTCTGTGTCTTTGATCAAAGGACAATGGACTGAAGAAGAAGACAGGAAACTGTTAAAGTTGGTGAAGCAACATGGTTTAAGGAAATGGTCTCAAATAGCTGACAAGTTGGATGGAAGAGTTGGCAAGCAGTGTCGAGAGAGGTGGAACAATCATCTGCGACCTGATATTAAGAAAGATAGTTGGAGTGAAGAAGAAGAGATGATATTAGTAGAAATGCATGCCAAGATGGGAAATCGTTGGGCAGAGATTGCAAAGCGGATTCCAGGAAGAACAGAGAATGCTAAAAAGAACCATTGGAATGCCACAAAGAGGAGGCTTAATTCAAAGAGAAAGAACAAAAAGACAGCAAACTCCAATGGAAAGCCACAATCCTCTATCCTTCAAAACTATATCAGAAGAAAGACTCAAACCAGCTCCACAACAACAATCTCTGACTCTGACCCTGCTGCAACAGAACAATCCCACCTTCAACTCTCTGATTCTGTTACCAATGACAATTTCTCATCACCACTAATAGTTGATCACCCATATGATGGTGATGATGAGTTACTCTTCATGCAACAACTTTTCAAGGACAATCGGACCCAACAGCAACCACTTGTCACTGATCAGAATGGGTTTATTCATTCCAATGCTGAGCCAAACTCATATAACAATGTGTACTTGGATGAAAGTCTTATTCTTAGAAAGACTCCTCCCACCCCCACCATCAATTCTGATCATGTCTATCTTTCTCACTTGATGAATGGAACTGCCACTTCATCACTTTGCTATAATTATGGGATTCAGTACCAGAACATGGACTTGCAATTGGGGGATCAAAATTCTTCAGATGGAAAGAAAGAGATGGATTTGATAGAGTTGGTTTGTTCTGCTCAATTTTTCCACTAG 948 0.4072 MQVLGKSSVKVGRRPKQGSSVSLIKGQWTEEEDRKLLKLVKQHGLRKWSQIADKLDGRVGKQCRERWNNHLRPDIKKDSWSEEEEMILVEMHAKMGNRWAEIAKRIPGRTENAKKNHWNATKRRLNSKRKNKKTANSNGKPQSSILQNYIRRKTQTSSTTTISDSDPAATEQSHLQLSDSVTNDNFSSPLIVDHPYDGDDELLFMQQLFKDNRTQQQPLVTDQNGFIHSNAEPNSYNNVYLDESLILRKTPPTPTINSDHVYLSHLMNGTATSSLCYNYGIQYQNMDLQLGDQNSSDGKKEMDLIELVCSAQFFH. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04744 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Seca4g04744 315 MobiDBLite consensus disorder prediction 106 182 - -
Seca4g04744 315 CDD SANT 28 71 IPR001005 -
Seca4g04744 315 ProSiteProfiles Myb-like domain profile. 20 71 IPR001005 -
Seca4g04744 315 SMART sant 76 124 IPR001005 -
Seca4g04744 315 SMART sant 24 73 IPR001005 -
Seca4g04744 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 75 IPR017930 -
Seca4g04744 315 PANTHER MYB PROTEIN-RELATED 25 150 - -
Seca4g04744 315 Pfam Myb-like DNA-binding domain 28 86 - -
Seca4g04744 315 FunFam Transcriptional activator Myb isoform A 24 77 - -
Seca4g04744 315 Gene3D - 24 76 - -
Seca4g04744 315 MobiDBLite consensus disorder prediction 136 182 - -
Seca4g04744 315 CDD SANT 79 122 IPR001005 -
Seca4g04744 315 SUPERFAMILY Homeodomain-like 22 118 IPR009057 -
Seca4g04744 315 Gene3D - 78 158 - -
Seca4g04744 315 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Seca4g04744 315 MobiDBLite consensus disorder prediction 119 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04744 Seca-Chr4 88206816 88208257 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04744 16 311 MYB Transcription Factor Family AT5G58850 42.121 3.28e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g04744 Myb_DNA-bind_6 1.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04744 K09422 - gmx:100786295 328.946