Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04732 ATGATGTCAAGATCGTATACCAACCTTTTAGATTTGGCTTCCGGGAATTTCCCGGCAATGGGGAGGGAGTCTAAGGAAAGAAGGAGGATGCCAAGGGTTATGAGTGTACCTGGGTTTGTCACAGAGGTGGATGATGACCAGGCAGTTAGTGTTTCTTCTGATAATCCGTCAACAATTTCTACAGATCGAATGATCATTGTGGCAAACCAGCTACCTTTAAAAGCAAAGCGAAGAGAGGACAACAAAGGGTGGAGTTTCAGTTGGAATGAGGATTCCTTGCTTTTACAGCTTAAGGATGGATTTCCAGAAGATATGGAGGTTCTTTATGTTGGATCTTTGCGCGTTGACATTGATCCGGCTGAACAGGATGACGTATCACAGTATTTATTGGAAAAGTTTAAGTGTGTCCCTACTTTTTTGCCCCCTGATGTTTTGGCAAAATTTTATGATGGCTTCTGTAAAAGGCAGTTATGGCCACTTTTTCATTACATGTTACCCTTCTCGACTGATAAAAGCCACCGTTTTGATCGCACTTTGTGGGAAGCCTATGTGCTGGCAAATAAACTATTCTTTCAAAAGGTAGTTGAAATAATAAACCCAGAGGATGATTATATTTGGGTTCATGATTATCATTTGATGGTGCTGCCGACATTTATAAGAAGGCGTTTTAACAGGGTTAAAATGGGATTTTTCCTGCATAGCCCCTTTCCGTCCTCAGAGATATATAGGACCCTTCCTGTGAGGGAAGAGATACTGAAAGCTTTACTAAACTCTGATATCATTGGATTCCATACCTTTGACTATGCCCGTCATTTCCTTTCCTGTTGCAGTCGAATGTTGGGTCTTGAGTATCAGTCAAAGAGGGGCTATCTAGGATTGGAATATTATGGAAGGACTATCAGTATTAAGATCATGCCTGTTGGGATTCACATGGGTCGTATTGAATCGGTTATGAGAACGGCAGATGAGGAGTGTAAGGTAAGGGAGCTCAAACAGCAATTCGAAGGAAAAACCATCTTGCTTGGTGTTGATGATATGGACATTTTTAAAGGCATAAATCTGAAGATTTTGGCGATGGAGCAGATGCTCAGACAACACCCCAAATGGCAAGGAAGAGCTGTTCTGGTCCAGATAGTAAATCCTGCAAGAGGTAAAGGGATACATCTAGAGGAGATACGTGCTGAAATACAAGAAAGCTGCAACAGGATCAACAGAGTGTTTGGACGACCTGGTTATGAACCTATTGTTTTTATTGATAGATCAGTTCCATTTACTGAAAAAGTTGCCTATTACAGCATTGCTGAGTGTGTTATTGTCACAGCTGTAAGGGATGGGATGAACCTAACTCCTTATGAATATATTGCTTGTCGACAAGGAATATCTGGTTCTGAATCATGTTCCAATGTCAGTGACCCAAAAAAGAGCATGCTAGTAATATCAGAATTTATTGGCTGTTCTCCATCTCTTAGTGGGGCTATCCGTGTCAATCCATGGAATGTTGAAGCAACCGCAGAGGCAATGAATGAGGCCATCTCAATGGGTGATGGAGAGAAACAGTTGCGGCATGAAAAACATTACCGGTATGTCAGCACTCATAATGTGGCTTACTGGTCACGCAGTTTCTTGCAAGACATGGAGAGGGCTTGCACAGACCTTCTTAGGAAAAGATGTTGGGGAATAGGTCTTAGCTTTGGATTTAGAGTTGTGGCACTTGACCCTAACTTTAAAAAGCTTTCAATTGATGCTATGGTTTCAGCTTACAAGAGGGCAAGGAGTAGGGCCATTTTATTGGACTATGATGGTACTGTGATGCCACAGAACTCCATTAATAAGAGTCCAAGCAAGGAGGTCATCTCTATTTTAAAAACACTCTGTGCTGACTCCAGAAATGTAGTTTTCATTGTTAGTGGACGGGGGAGGGATAGCTTAAGTGAATGGTTTATTCCCTGCAAAAAACTTGGAATTGCTGCAGAACATGGGTATTTCATGAGGTCTGATCTCTCTCTTTCTGATATGTCATCCTCTTTTTTTTGGCTTAGTATCAGTTGTTCAGATATTACTTTTTGCTTGAGTCATATGAAACATATATTTTAA 2094 0.4117 MMSRSYTNLLDLASGNFPAMGRESKERRRMPRVMSVPGFVTEVDDDQAVSVSSDNPSTISTDRMIIVANQLPLKAKRREDNKGWSFSWNEDSLLLQLKDGFPEDMEVLYVGSLRVDIDPAEQDDVSQYLLEKFKCVPTFLPPDVLAKFYDGFCKRQLWPLFHYMLPFSTDKSHRFDRTLWEAYVLANKLFFQKVVEIINPEDDYIWVHDYHLMVLPTFIRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTISIKIMPVGIHMGRIESVMRTADEECKVRELKQQFEGKTILLGVDDMDIFKGINLKILAMEQMLRQHPKWQGRAVLVQIVNPARGKGIHLEEIRAEIQESCNRINRVFGRPGYEPIVFIDRSVPFTEKVAYYSIAECVIVTAVRDGMNLTPYEYIACRQGISGSESCSNVSDPKKSMLVISEFIGCSPSLSGAIRVNPWNVEATAEAMNEAISMGDGEKQLRHEKHYRYVSTHNVAYWSRSFLQDMERACTDLLRKRCWGIGLSFGFRVVALDPNFKKLSIDAMVSAYKRARSRAILLDYDGTVMPQNSINKSPSKEVISILKTLCADSRNVVFIVSGRGRDSLSEWFIPCKKLGIAAEHGYFMRSDLSLSDMSSSFFWLSISCSDITFCLSHMKHIF. 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04732 697 Gene3D Glycogen Phosphorylase B; 317 530 - -
Seca4g04732 697 Pfam Glycosyltransferase family 20 63 546 IPR001830 GO:0003824|GO:0005992
Seca4g04732 697 CDD GT20_TPS 63 546 IPR001830 GO:0003824|GO:0005992
Seca4g04732 697 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 56 315 - -
Seca4g04732 697 Gene3D Glycogen Phosphorylase B; 56 316 - -
Seca4g04732 697 Gene3D - 592 670 IPR023214 -
Seca4g04732 697 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 31 665 IPR001830 GO:0003824|GO:0005992
Seca4g04732 697 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 63 550 - -
Seca4g04732 697 SUPERFAMILY HAD-like 593 666 IPR036412 -
Seca4g04732 697 FunFam Alpha,alpha-trehalose-phosphate synthase 317 530 - -
Seca4g04732 697 Pfam Trehalose-phosphatase 596 666 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04732 Seca-Chr4 88085367 88088410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04732 1 681 Trehalose Biosynthesis Gene Families AT1G06410 76.496 0.0 1102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04732 K16055 - gmx:100800847 1271.91