Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04719 ATGTCATATTCACGCTTAATTCAAATGTTGAAAAATTCAAAGGACTTGCATAATTGCATTCAAACTTCACTTACTACTAGCATTAGATTTGAGACAGCATTCAATGCAATCACTTACTACTTCCATAGTTTTGCTTCGGCTTCTGCAATTGCAATGGCTTGCAACAGCATTCAATGCAATTCTTCTTCATCTGATCAGGTGATATGCAAATATGATGTGTTTGTGAGTTTCAGAGGTGAAGACACACGAAATAACTTCACCGATCATCTTTTCGGTGCTCTCCATAGAAAAGGTGTTGTTACCTTTAGGGATGACATAAAGCTCAAGAAAGGGGAACATATATCAATTGAGCTTTCACAAGCAATTGAAGGATCACAGGTTTTGATTGTTGTCTTCTCAAAAAACTATGCTTCTTCCACATGGTGCTTGCAAGAACTGGCGAAGATCGCTGATTGCATTCATGTACGAGGACAAACTGTTCTGCCTATTTTCTATGATGTGAATCCATCTGAGGTGCGAAAACAGAGTGGCAATTATGAAAAGGCCTTTGTGGAACATGAAGAAAGAATCAAAGAGGATTTAGAAAAAGTGCAAAGATGGAGAGAAGCTCTAACACAAGTGGCCAATCTTTGTGGTTGGGATATAAGGGATAAGCCACAATATGCAGAGATTGAAAAGATTGTTACAGAGATAAGAAGTATACTGGGTTACAAATTTTCAAGTCTTCCAAATGATCTAGTTGGGATGCATTCTCCAATAGAAGAATTGGAAAAACTTTTACTTTTGGGATCAGTTGATGGTGTTTGGGTTGTAGGAATTTGTGGGATGGGTGGAATAGGGAAGACAACTCTCGCTACTGTTTTATATGAAAGAATCTGTCATCAATATGATGCCTGCTATTTTATTGATGTCAGCAAAATTTATAGAGACCATGGTCACCAAAAGCATCTTTTATGTCAAACTCTCAATAAAGAAAGCCTACAAAGATACAATCATTCTAAGGCTACTAATTTGGAGAAATTAAGGGCCCTGATAGTTCTTGATAATGTTGATCAAATTGAACAATTGGAGAAATTAGCTCTAAATCGTGAATGGTTAGGTGCAGGGAGTCGAATCATCATAACTTCTAGAGATGGGCATATTTTAAAAGAGTATAGTGTGGATGTAGTTTATAATGTTCAACTATTGACTAATGATAATGCTCTTAAATTGTTTTGTAGAAAAGCTTTCAAATGTGATCATATTATGAGAGATTATGAAAATTTGACACATGATGCTATAGAATATGCTAGTGGCCTACCTTTAGCAATTAAAGTGTTGGGCTCATTTTTGTTTGGACGAGATGTCTTCGAGTGGAGAAGTGCATTGGCAAGATTAAGAGAAAATCCAAGCAAAGATATCATGGATGTATTACAATTAAGTTTTGATGGACTAGAGAAAATGGAAAAGGAAATATTTTTAGATATTGCTTGTTTCTTTTGCAGCGAGAATGAGATATATGTGAAGGAAGTTCTAGATTTTCGCGGATTTCATCCTGAAATTGGTATGCGAATTCTCATTGATAAATCACTCATAACCAATGATAATGGGATGATTTACATGCATGGTTTGCTGCGAGATCTAGGCAGGAGTATTATTCGAGAAAAATCACCCAAAAAGCCAAGAAAGTGGAGCAGGTTGTGGGAATACGACGATATCCATAATGTTATGTCAGATAATAATATGGAAACAAAAAATCTTGAAGCCATAGTCATGGAACAATATTCAAACAAGTTTCCAGAAACAACAATGAGGGTTGATGCTTTATCAAAAATGAGTCACCTTAAGTTGCTTATACTATGGAATGCAAATTTTTCAGGGAGCCTTAATTATCTTTCAAATGAAATAGGATATCTTTCTTGGGATAAATATCCTTTTCAGTGCTTGCCACCAAGTTTCCAGCCAGATAAACTTGTTGAGTTGATCCTGCCTTACAGCAACATCAAACAACTATGGGAAGGCTCAAAGCCTCTACACAATTTGAGACGTATTGATCTCTCTCACTCGAAGAATCTTATTAAGATGCCAAATTTTACAGAGGTCCCAAATCTTGAAGGGCTAGATCTTGAAGGATGTATGAAACTTGTGCAAATCCATCCATCCATTGGTATTCTAAGAAAGCTTGCTTATTTGAACTTGAAAAATTGTAAAAGTCTAATTAGCATTCCCAATAACATTTTTTGTCTCAGTTCTCTTGAACACCTAAATCTCTCTGGCTGCCCAAAATTACTTCATAATCAGTTGTTAGAGATACCAAGGTATGCAAAACACTTAGAAAAGCTTGAAATAAATAATACTACTATCCAACGAAAGTCAACATGCTCCTCCATGTACAAAGTTCTAAAGTTGCCTTTTCATTTTTTCAATTCTCAAAGACATGAAGATTCAATTGGTTTATTCTTTCCTTCTTTGTCTCGTTTCCCATGCTTGCAATATCTTGACCTAAGTTTCTGTAATCTACTTCAAATCCCCGATGCTATTGGGTTGTTACATTCTTTAGTGAGGTTAAACTTGGGGGGAAACAAGTTTGTTACACTACCTTCTAGCATCAAGGAACTTTCCAAACTTAGACTATTGAACTTGGAACACTGCAAGCAGCTGAAATATTTGCCTGAGCTTCCACCAAAAGTTGTCTTGCCAATTAGAAGCGAAACATGGTTTGGTAGATATCATGTAGGATTATATATTTACGATTGTCCCAAATTGTGTGAGATGGAATGCTATTGTAGCATGGCTTTTTCTTGGATGATACAAGTTCTTAAGGTGCACATGGAATCCACCCTCCCCTTGGGTCAGATAGATATTGTTATTCCTGGATTTAAAATTCCAAGGTGGTTTAAAAATCAAAATGTGGGTAATTCAATAAGCATGGATCCCTCTCCCATCATGCGTGACAAGAATTGGATAGGTGTTGCTTGTTGTGTAGCATTTGTGGCTCATGATGATCCAACTAATTTAAGTGAAACAAGGAAACCTTATATTGCATGCGGCTTTGAAAATAAAAGGCGAGGTTCCTTTCCCCATATCCCCATACATATTGGGAAGCATTTGGTCACACTTGAATTAGGTCACCTGTTGCTACTCTTTTTCACTCGAGAAGAATTCATTGATGACTATGTAAGCTTTATAACATATGGAACAAATGATCTTGATGATATTAAAATGGCAACCACAATTGAGCAGCCCCAAGGTTTGCATTTGGAGGTGAGAAAGTGCGGGTATCGTTGGTTATTTGAGGAGGATTTGGAACAATTAAGCAAAAAAATGGTGTATAGTAACAATTTGTCACGGAAGTGCAAGCTTTTGACAATGGATTAG 3357 0.3646 MSYSRLIQMLKNSKDLHNCIQTSLTTSIRFETAFNAITYYFHSFASASAIAMACNSIQCNSSSSDQVICKYDVFVSFRGEDTRNNFTDHLFGALHRKGVVTFRDDIKLKKGEHISIELSQAIEGSQVLIVVFSKNYASSTWCLQELAKIADCIHVRGQTVLPIFYDVNPSEVRKQSGNYEKAFVEHEERIKEDLEKVQRWREALTQVANLCGWDIRDKPQYAEIEKIVTEIRSILGYKFSSLPNDLVGMHSPIEELEKLLLLGSVDGVWVVGICGMGGIGKTTLATVLYERICHQYDACYFIDVSKIYRDHGHQKHLLCQTLNKESLQRYNHSKATNLEKLRALIVLDNVDQIEQLEKLALNREWLGAGSRIIITSRDGHILKEYSVDVVYNVQLLTNDNALKLFCRKAFKCDHIMRDYENLTHDAIEYASGLPLAIKVLGSFLFGRDVFEWRSALARLRENPSKDIMDVLQLSFDGLEKMEKEIFLDIACFFCSENEIYVKEVLDFRGFHPEIGMRILIDKSLITNDNGMIYMHGLLRDLGRSIIREKSPKKPRKWSRLWEYDDIHNVMSDNNMETKNLEAIVMEQYSNKFPETTMRVDALSKMSHLKLLILWNANFSGSLNYLSNEIGYLSWDKYPFQCLPPSFQPDKLVELILPYSNIKQLWEGSKPLHNLRRIDLSHSKNLIKMPNFTEVPNLEGLDLEGCMKLVQIHPSIGILRKLAYLNLKNCKSLISIPNNIFCLSSLEHLNLSGCPKLLHNQLLEIPRYAKHLEKLEINNTTIQRKSTCSSMYKVLKLPFHFFNSQRHEDSIGLFFPSLSRFPCLQYLDLSFCNLLQIPDAIGLLHSLVRLNLGGNKFVTLPSSIKELSKLRLLNLEHCKQLKYLPELPPKVVLPIRSETWFGRYHVGLYIYDCPKLCEMECYCSMAFSWMIQVLKVHMESTLPLGQIDIVIPGFKIPRWFKNQNVGNSISMDPSPIMRDKNWIGVACCVAFVAHDDPTNLSETRKPYIACGFENKRRGSFPHIPIHIGKHLVTLELGHLLLLFFTREEFIDDYVSFITYGTNDLDDIKMATTIEQPQGLHLEVRKCGYRWLFEEDLEQLSKKMVYSNNLSRKCKLLTMD. 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04719 1118 ProSiteProfiles TIR domain profile. 69 235 IPR000157 GO:0007165
Seca4g04719 1118 SMART till_3 70 210 IPR000157 GO:0007165
Seca4g04719 1118 Gene3D Ribonuclease Inhibitor 571 790 IPR032675 -
Seca4g04719 1118 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 489 IPR027417 -
Seca4g04719 1118 SUPERFAMILY Toll/Interleukin receptor TIR domain 63 213 IPR035897 -
Seca4g04719 1118 SUPERFAMILY L domain-like 547 918 - -
Seca4g04719 1118 FunFam Disease resistance protein (TIR-NBS-LRR class) 68 236 - -
Seca4g04719 1118 Pfam Leucine Rich Repeat 650 669 IPR011713 -
Seca4g04719 1118 Pfam NB-ARC domain 254 465 IPR002182 GO:0043531
Seca4g04719 1118 Gene3D - 68 235 IPR035897 -
Seca4g04719 1118 Pfam Leucine rich repeat 823 878 IPR001611 GO:0005515
Seca4g04719 1118 Gene3D - 236 390 IPR027417 -
Seca4g04719 1118 Gene3D - 395 479 IPR042197 -
Seca4g04719 1118 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 71 758 IPR044974 GO:0006952
Seca4g04719 1118 Pfam TIR domain 70 231 IPR000157 GO:0007165
Seca4g04719 1118 PRINTS Disease resistance protein signature 270 285 - -
Seca4g04719 1118 PRINTS Disease resistance protein signature 337 351 - -
Seca4g04719 1118 PRINTS Disease resistance protein signature 430 444 - -
Seca4g04719 1118 PRINTS Disease resistance protein signature 864 880 - -
Seca4g04719 1118 Pfam C-JID domain 950 1096 IPR045344 -
Seca4g04719 1118 Gene3D Ribonuclease Inhibitor 791 890 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04719 Seca-Chr4 87848860 87852921 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04719 61 849 WRKY Transcription Factor Family AT4G12020 30.998 1.42e-89 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04719 - - psat:127106907 1308.51