Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04718 ATGCCTTGCAGGATTCAAGATAGATTCATGCGAAAACAGAGCGGAGATTATGAGAAAGTCTTTGCCAAACATGAAGAAAGATTCAAAGAGGATTTAGAGAAGTTGGTGGAAATACAAAGATGGAGAGAAGCTTTAACACAAGTTGCCAATCTCTCTGGTTGGGATATACGGGATAAGCCACAGTATGCAGAGATTGAAAAAATTGTTGAAAAGATAATAAGTGTATTGAGTCACAAATTTCCGGGCATTCCAGATTATCTGGTTGGGATGGAGTCTCCAGTAGAAGAGTTAGAAAAGCTTTTACTTTTGGGCTCACCCAATGATGTTCGAGTGGTAGGAATTTGTGGGATGGGTGGAATAGGAAAGTCAACTCTTGCAACTGTTGTATGTCACAGAATCTGTTCTCAATTCGAAACTTCCTGTTTTATTGATGTTAGCCAAACTTATAGACTTTGTGGTCCAATTGGTGCCCAAAAGCAACTTCTATGTCAAACTCTAAATGAAGAAAACCTTCATATATGCAATCATTATGGGGCAGCTAATTTGATACGAAGTAGGCTATGCCATTTAAGGGCACTTATAGTTCTTGATAATGTTGATCACGTTGAACAGTTGGAGAAATTAGCTGTGAATCGACAATGGTCAGGTGCAGGAAGTCGAATCATCATAATTTCCAGAGATGAACATGTTTTGAAAGAATATGGAGTGGATGTAGTTTACAATGTTAAACTCTTGAGTGAATATAATGCTCTTAGATTGTTTTGTAAAAAGGCTTTCAAATGTGATGATATTATGAGAGATTATGAAGATTTGACAGATGAAGCCGTAAAATATGCTAATGGTCTACCACTAGCTATTAAAATATTGGGCTCATTTTTGTACGATCTAGATATCTGTGAGGGTAGAAGTGCATTGGCAAGATTGAGAGAATATCCAAGAAAAGATGTCATGGATGTGTTGCGAGTAAGTTTTGATGGATTGGAAAAAGAAATATTTCTAGATATTGCTTGTTTCTCCCATGTGGAGTACGGTTGGACATATATGGAGGGTATGTTAAATTATCATGGTTTTGATCCAAAAATTGGTATTAGAGTTCTCATTGATAAATCACTCTTAACATGTGATCAATATGGAATAATAGAGATGCACAACTTGTTGAAAGAATTGGGTAGGAGTATTGTTCGAGAAAAATCACCCAAACAACCAAGAAAGTGGAGTAGGTTGTGGGACTACAAGGATCTCCAAAATGTTATGTTAGAAAATAAGGAAGCAGAAAATCTTGAAGCCATAGTCATGGAAAGATATCCACCCAAGAATCCAGAAACAACAACAATGAGGGCTGATGCTATATCAAAAATGAGTCACCTTAAGTTGCTGATACTTTGGAATGTTAATTTTTCAGGAAACCTCAATCATCTTTCCCATGAATTAATATATCTTACTTGGGATAAATATCCTTTCCAGTGTTTGCCACCAAGTTTCGAACCAGATAAACTTGTTAAACTGAACTTGACTCACAGCAGCGTCAAACAACTATGGGAAGGCTCTAAGCTTCTACCCAATTTAAGACATATGGATGTCTCTCACTCAAAAAATCTTATTAAGCTGCCGGATTTCAGGGAGTTCCCAAATCTTAAGGATCTAGTTCTTAAAGGATGTATTAGCCTTGTGTATATTGATTCATCCATTGGTTTTCTTAAAAAGCTTGTTCATTTGAATTTGAAAGATTGTAAGAATTTAGTCAGTATTCCCGACAACATTTTTGGTCTCAGTTCTCTTAAAAGACTAAATCTCTCTGGGTGCTCAAAATTACTTAACAATCGGGTGATAGAGAAACCGAGGCAAGCAGAACATTTAGAGAAGCTGGAAATAAATGAAAGTACTATGCAATGGCAGTCAACATCCTCCATCTACAAATTTCTGAAGTTGCCTTTCCGTATTTTCAATTCTCCAACACATGAAGATTCAATTGGTTTATTATTGCCTTCTTTGCCTCGTTTCCAATGTTTGCGTGATCTTGACATAAGCTTTTGCAATCTACTTCAAATCCCCGACGCTATAGGATGGTTACATACTTTAGAAAGCTTGAATTTGGGGGGAAACAATTTTGTTACACCACCTTCTAGCATTAAGGAACTTTCCAACCTTCATAGTTTGAACTTGGAACATTGTAAGCAGTTGAGATATATGCCTGAGCTCCCGTCAACAACTCCCAATTCTGGACTTAAAAAGAGTGGGGGCGCATTATCTGGCATTCCAATTCGTTTGGAGAAAAATCTGGTCACAGTTGAATTCGATCACCTGTTGCTAAGTTTTTACACTCGAGAAAGCTTCCTTTCTTATTATAACAGTGCTATAACAAAAGGAACACATGATCTTGATGGCCTCGAATTGGCAGTTCATATTGACCAGCCCCAAGGTTTGCATGTGGAGGTGAAAATGTGTGGGTATCGTTGGGTATTTAAGGAGGATTTGGAACAATTAAAAACAGAAATGATGTATAGCAGAAATTCATCAGTCCAAAAGCACTAG 2532 0.3712 MPCRIQDRFMRKQSGDYEKVFAKHEERFKEDLEKLVEIQRWREALTQVANLSGWDIRDKPQYAEIEKIVEKIISVLSHKFPGIPDYLVGMESPVEELEKLLLLGSPNDVRVVGICGMGGIGKSTLATVVCHRICSQFETSCFIDVSQTYRLCGPIGAQKQLLCQTLNEENLHICNHYGAANLIRSRLCHLRALIVLDNVDHVEQLEKLAVNRQWSGAGSRIIIISRDEHVLKEYGVDVVYNVKLLSEYNALRLFCKKAFKCDDIMRDYEDLTDEAVKYANGLPLAIKILGSFLYDLDICEGRSALARLREYPRKDVMDVLRVSFDGLEKEIFLDIACFSHVEYGWTYMEGMLNYHGFDPKIGIRVLIDKSLLTCDQYGIIEMHNLLKELGRSIVREKSPKQPRKWSRLWDYKDLQNVMLENKEAENLEAIVMERYPPKNPETTTMRADAISKMSHLKLLILWNVNFSGNLNHLSHELIYLTWDKYPFQCLPPSFEPDKLVKLNLTHSSVKQLWEGSKLLPNLRHMDVSHSKNLIKLPDFREFPNLKDLVLKGCISLVYIDSSIGFLKKLVHLNLKDCKNLVSIPDNIFGLSSLKRLNLSGCSKLLNNRVIEKPRQAEHLEKLEINESTMQWQSTSSIYKFLKLPFRIFNSPTHEDSIGLLLPSLPRFQCLRDLDISFCNLLQIPDAIGWLHTLESLNLGGNNFVTPPSSIKELSNLHSLNLEHCKQLRYMPELPSTTPNSGLKKSGGALSGIPIRLEKNLVTVEFDHLLLSFYTRESFLSYYNSAITKGTHDLDGLELAVHIDQPQGLHVEVKMCGYRWVFKEDLEQLKTEMMYSRNSSVQKH. 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04718 843 Gene3D - 3 75 IPR035897 -
Seca4g04718 843 Gene3D - 244 328 IPR042197 -
Seca4g04718 843 Pfam NB-ARC domain 91 294 IPR002182 GO:0043531
Seca4g04718 843 Gene3D - 76 239 IPR027417 -
Seca4g04718 843 Gene3D Ribonuclease Inhibitor 652 743 IPR032675 -
Seca4g04718 843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 330 IPR027417 -
Seca4g04718 843 Gene3D Ribonuclease Inhibitor 442 639 IPR032675 -
Seca4g04718 843 PRINTS Disease resistance protein signature 588 604 - -
Seca4g04718 843 PRINTS Disease resistance protein signature 279 293 - -
Seca4g04718 843 PRINTS Disease resistance protein signature 186 200 - -
Seca4g04718 843 PRINTS Disease resistance protein signature 111 126 - -
Seca4g04718 843 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 605 IPR044974 GO:0006952
Seca4g04718 843 SUPERFAMILY L domain-like 450 732 - -
Seca4g04718 843 SUPERFAMILY "Winged helix" DNA-binding domain 315 417 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04718 Seca-Chr4 87804305 87807483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04718 37 696 WRKY Transcription Factor Family AT4G12020 31.617 2.88e-74 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04718 - - tpra:123922646 865.914