Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04707 ATGGAATTTAACAAGGACTTTATAGATGGTTGTTCTACATTTTGGACTGATGAAAATTCTGAGAGCAACCGAGATGAGTCACGTAATGGGGATGGAAACCCGGTGGGAGACCAACCTGGGCTGTCATGGGGCGGGAGGATGATACATGAACTAACACATGATGACATTAGACGTCTGGAGTTCGGTTCTGAGGGTGAGGCATATAGTTTTTATTCGGATTATGCCAAACAACGAGGGTTTGCTGTGAGGAAAGATGATATTGAGCGAAATGAGAATGGTGATATTGTTAAGCGGTATTTAGTGTGTAATAAGGAGGGAACAAGGGACAAGAAACACTTGGAGAGAAAGGACAGAGTGAGGGAGGCGAGGCCAATTACTCGTGTGCAATGCACAGCAAGGATGCATGTTTACTTAGATATGAGGAGTGGGAAATGGAAGGTGTCTACATTCCACGACGATTATAACCATGAGTTAACTCCTCCAACGTATGTTCACATGATGCCAGCTTATAGACGATTGAGTGAATCTGATAAAGCTCAAATTGATACCCTGCATGCAGCCGGTGTGAGAACTTGCCATATTATGAGTTTTATGATTGGACAGAAAGGGGGACATGGTGAATTAGGTTTATGTAAAAAGGACATGTATAACCACATTGATAAACAAAAGAGGGCTAATATAGATGATGGTGATGCATTTGCAGCGCTGTGTTATTTGCAGGGAAAGTATAACAGTGATCCACTAATGCATTGCATGTTCAGGACAACAGACGATGGCAGACTGCAGGACCTATTTTGGTGTGACGGTGCAAGTCGTGTTGATTATCAGTGTTTTGGATATGTAATAGCATTTGACACGACTTATAAGAAGAACAAATATAACAAGCCTTTGGTTATTTTTTGCGGGTATAACCACCATGGGGAGACATGTATATTTGGTTGTGCACTTGTTGCTGATGAGAAAATTGAGACTTACAAGTGGGTTCTCGAGACGTTTTTGGAAGCAATGTTTGGCAAAGAGCCCAGTGCTGTAGTTACAGATGGAGATGCAGCCATGCGAGAAGCTATCAGGGTTGTATTCCCAAGTGCAGTTCACAGACTTTGTTCATGGCACATACACCAAAATGCCTGTGAGAATGTGAAGAATTCAAAATTTCTAGAGGAATTCAAGCGCATGATTTATGGCAAATTCACGAAGGATAGATTAGAAAGGGAGTGGACAAACATGGTTGATAAATTTGGATTATCTAACAACAGGTGGGTCCAGAAAATGTATGACATGAAAAGGTTATGGGCAAATTCATATATGGGAGACACATTTTATGGTGGTATTAGAACAACGTCTGTGTGTGAGGGGATTAATTCGTTCATTAAGAGGTATGTCCAAAATAGGAACAGCCTGGTGGACTTCCTTCACAACTTCGACAGGGCGTTAAAGGAGTACAGGCACAATGAATTGATTTCTGATTTTAAGTCATTTTACGAAGAACATGTATTTACCACAACTCTTTTTACCATTGAGGAATGTTCCTCCAAAGTGTTCACTAGGAAAAAGTTTTGGGAAGTTAAGTCTGAGATTGAGAGTGCGACTGCGTACAATGTAGTGGATAGGGTTGTGACTGGTGAGGCTGTGAGGTTGACAATGAATAAATTTTGCAAACCGGATTATGAGTATGATGTTGTATTAGATAAAAGTGAATTGAAGTTCAATTTTGAGTGTAGAATGTTTGAGTCATGTGGCATTCTTTGCCGTCACATTTTTTGTGCAATGAAGAATGAGCTCGTGAAAAGCATTCCAAGTAGCCTAATACTGAAGCGATGGACAAAATCAGCGAAGCCTGATTTCATGTCTAGTGAGCCCGTTGTGAGGTTAGATAAGGAAAAGGTTGACATGCTAAGGGAGGGAGGTATAGGTGCTGCATGTGACTATTTATCCCGTGTTGCTAAGAAACATGTGCATGATTACAAGTCCATTATGGATGACATATATAAACTCGATGAAAAAATTGAAAGTCGTAATTGCCAGAGTGAAAAGAAAAATAATGGGCGGGGTCAAATTGGTGATCCAGAGGTGGTGAATACTAAAGGCGCACCAAGGAAGAGTAGAAGGATGACGGAAGGCAGAAGGTGTTCGAACTGTAAACGAAGAGGACACACTAAGAACAAATGTCCTGGATTGAGTCAATGGGATGTTTTAGGGGAAGCTGAAGACGATGAATCTTCGTGGGAGAGTGATGGTGCCATGGGAAATGATAAAGGAGAAGTGATGATGGTTGTGTTTGATATACAGGGTGAATTTAGTTGGGGTGATGATTTAACTCTCAGTCAAAGAGGATCGGCCAGTATAAGCAAAGGGAAGAGGCGGTGTGTGTCTCAACCATCCCAAACATCCTTCGGTCGTGCTGAATTGCAGGGACTACATGACAAGGTTGGTGAAAGACAAGCCAAGCAAAGTAGACGTTCAAATGGCAAGCAGAAAAATCAAGGAGTAGACGGAGCAAGAGAGGAGATGAAGTTTGGACCTGGGAAGATGGGTCCAGGAGCGGGCGTTAACAATGTTAATATGCTCCTGTTATTCAACAGGTTGGAAGCAATATTCTCCTTTCCCTCTCCCAAGTTAACCACTGAGTTGCTTCTAATAGAGCTTTTCGAGGAGAAAGAAGAGAAAGTGGCAGAGCACCATGAGCTAAAGGCTCTTTTAGATTTTAGGATAGTTTCCTTTCTAATGTTCTAG 2733 0.4168 MEFNKDFIDGCSTFWTDENSESNRDESRNGDGNPVGDQPGLSWGGRMIHELTHDDIRRLEFGSEGEAYSFYSDYAKQRGFAVRKDDIERNENGDIVKRYLVCNKEGTRDKKHLERKDRVREARPITRVQCTARMHVYLDMRSGKWKVSTFHDDYNHELTPPTYVHMMPAYRRLSESDKAQIDTLHAAGVRTCHIMSFMIGQKGGHGELGLCKKDMYNHIDKQKRANIDDGDAFAALCYLQGKYNSDPLMHCMFRTTDDGRLQDLFWCDGASRVDYQCFGYVIAFDTTYKKNKYNKPLVIFCGYNHHGETCIFGCALVADEKIETYKWVLETFLEAMFGKEPSAVVTDGDAAMREAIRVVFPSAVHRLCSWHIHQNACENVKNSKFLEEFKRMIYGKFTKDRLEREWTNMVDKFGLSNNRWVQKMYDMKRLWANSYMGDTFYGGIRTTSVCEGINSFIKRYVQNRNSLVDFLHNFDRALKEYRHNELISDFKSFYEEHVFTTTLFTIEECSSKVFTRKKFWEVKSEIESATAYNVVDRVVTGEAVRLTMNKFCKPDYEYDVVLDKSELKFNFECRMFESCGILCRHIFCAMKNELVKSIPSSLILKRWTKSAKPDFMSSEPVVRLDKEKVDMLREGGIGAACDYLSRVAKKHVHDYKSIMDDIYKLDEKIESRNCQSEKKNNGRGQIGDPEVVNTKGAPRKSRRMTEGRRCSNCKRRGHTKNKCPGLSQWDVLGEAEDDESSWESDGAMGNDKGEVMMVVFDIQGEFSWGDDLTLSQRGSASISKGKRRCVSQPSQTSFGRAELQGLHDKVGERQAKQSRRSNGKQKNQGVDGAREEMKFGPGKMGPGAGVNNVNMLLLFNRLEAIFSFPSPKLTTELLLIELFEEKEEKVAEHHELKALLDFRIVSFLMF. 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04707 910 ProSiteProfiles Zinc finger CCHC-type profile. 708 724 IPR001878 GO:0003676|GO:0008270
Seca4g04707 910 MobiDBLite consensus disorder prediction 14 43 - -
Seca4g04707 910 MobiDBLite consensus disorder prediction 675 717 - -
Seca4g04707 910 Pfam FAR1 DNA-binding domain 69 159 IPR004330 -
Seca4g04707 910 MobiDBLite consensus disorder prediction 805 819 - -
Seca4g04707 910 PANTHER OS01G0519700 PROTEIN 59 725 - -
Seca4g04707 910 SUPERFAMILY Retrovirus zinc finger-like domains 696 726 IPR036875 GO:0003676|GO:0008270
Seca4g04707 910 Pfam MULE transposase domain 281 375 IPR018289 -
Seca4g04707 910 MobiDBLite consensus disorder prediction 695 712 - -
Seca4g04707 910 MobiDBLite consensus disorder prediction 779 801 - -
Seca4g04707 910 MobiDBLite consensus disorder prediction 779 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04707 Seca-Chr4 87585985 87590348 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g04707 MULE 3e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04707 - - tpra:123910662 761.525