Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04692 ATGGCTTGCAGCAGCAGCTCTTCTTTAGCTCTGGTGAAGAAGAAATATGAAGTGTTTGTGAGCTTCAGAGGTGAAGACACACGAAACAGCTTCACCAGTTTTCTTCTTGAAGCACTCAGTACCAAATGTATCACTACATTCAGGGATGATAAAGAGCTTGAGGGCCAACCCATAGCACCTGGCCTCTTCCATGCAATTGAAGAGTCTCGTGTTTATATTGTGGTCTTCTCAAAGAACTACGCTTCTTCAACATGGTGCTTGCAAGAACTTGCAAAGATCCACTATGAGTGCCCTGACATATCATCAGGAAAGCATGTTTTGCCTATTTTCTATGACGTTGATCCATCTGAGGTTCGAAAACAGAGTGGGGATTATGGGGAGGCAATTGCAAAACATGAGGAAAGATTCAAAGATGATTTAGAGAAAATGGCAGAAGTACAAACATGGAGACAAGCTCTAACACATGTAGCTAACTGCTCTGGTTGGGATATCCGAAACAAGTCACACTCTGGTGAGATGAAAAAAATTGTTGAAAAGGTAGTGAATATTCTGGCTTACGAATGTTCAAGTCCTCCACATGATCTTGTTGGGATACAATCTCCCTTACAAGAATTAGAAGAGCTTTTACGTTTGGACTTGATTGATGATGTCAGGGTTATAGGAATTTGTGGGATGGGTGGCATAGGAAAGACAACTCTGGCTAATGCTTTATTCCACAAAATCTCTCGTCAATTTAATGCTTGCTGTTTTATTAAAGATGTAAGCAAAAGTCATAAAGATCATGGCCCCATTGCTGCACAAAAGCAAATTCTACATCGCACTCTAAACATAGAAAACCTTCAGATATGGGATCATTATCATGCTTCTAATTTACGGAGAAGGCTACATTTATCAAGGGCACTTATAGTTCTTGATAATGTTGATCAAGATAAACAACTGCAGGAATTAGCCTTGAATCGTGAATGGTTAGGTGTTGGGAGTAGAATCATCATAATTTCTAGAAATGAGCATATTTTGGAAGAGCATGGAGTGGATAAAGTTTACAAAGTTCCACTTTTAAATCCGGATAACTCTCTTCAATTGTTTTGTACAAAAGCTTTCAAACTGAGGGGTGTATTGACAGATTATGAGAAGTTGACATATGATATACTGGCATATGCTAATGGCCTGCCACTGGCAATTAAGGAGAAGAACGTTGAAGTGATAGGTGAACCTATGAGATATATTACAAGCGAAGGGGAAAAATATATGATCGATGCTGAAACATTGTCAAAAATGAGTCGTCTTAGATTGCTCATACTCGGAAAGGGAGGGAATATTTCAGGAACTCTGAACCGCCTTTCAAATGAAATAAGATATTTTGAGTGGCTTTTGTGTCCCCTATTGTACTTGCCATCAAATTTTCAGCCGATTCAACTTGTTGAATTGATTTTACAGCGTAGCAACATCAAACTACTATGGCAAGGCAAGAAGTATCTACCCAATTTGAGGAATCTGGATCTACAGTGGTCTACAAATCTAATCAAGTTGCCAGATTTTCGACAAATGCCAAATCTGGTGCGGCTAGATCTTGAAGGATGTACAAAACTGGTGGAGATCCATCCATCTATTGGTGTTCTGAAAAAGCTTTGTTTTTTTCATTTTGAAAGACTGTGTTGCTCAAAAGTGTTTAACAGCCCAAGGCAAGTGAAGGTTGATATAGTCAGATGGATTGCGTGGCCTTTCCAATTCTTGTATCCCAGAGCACACAATGATTCAGTGATTAGTTGTTCTAGTCCATCCTTGCCAAGCTTCTTTCATTTGAGGGATCTTGATCTAAGTTTCTGCAATCTACCCCAACTCCCTGATGCTATTGGAAGTTTGCATTGTTTAGAAACCTTAAATTTAACAGGACAAAATTTTGTCACACTGCCTAGCCTCAAGGGGCTTTCTAAACTTGTATATTTAAATTTGGAGCATTGCAAGCACTTGGAAATTTTGCCTGAGCTCCCTTCACATATTTGTGCACCAATACGAATACAAATTCCTTTTTGGGGTGTGTATCCAGGTCTATATATTTTCAACTGTCCTAAATTGGGTGAGAGGGAACGCTGCACAAGCATGAGTTATTCATGGATGAAACGACTCATTCAGGCACACCAAGAATCATCTGCCCCTTATAGGGAGATTCATGTTGTTATTCCTGGGGTTGAAATTCCAAAGTGGTTCAACAATCAGAGCCAGAGCGTGGGTGTTAGTGATGGTGAAATTACGTTAGACCTATCTTCCGTTATGCATGATGATAACTGGATTGGCATGGCGTGTTGTGTGGTATTTGAGGCACAGCCACTTGGTGGTCCAACTTCTTCAAGAAATGAATGGGAATCCAAAGTATGTATTAGTTATACAGATAATAGGAATGGAAGTTGGATCTATATTCCAGTAATTCTAGATGGAAACCTTATCATAGTGGAATCAAACCACATATGGCTAACCTATATCGATTGGAAATGCTTCTTTAGATCTGTGGACGATTTAAATGATACTACACTCAGACCCGAATATGGCACTAATCTCAAAATGAAAGTTGTTGTCAACTCCGCCCCAAGTTTGCGTGTTGAGGTGAAGAGTTTTGGGTGTCGTTGGCTATTTGAACAGGATCTAGAGCTATTTGACTTATCATTGCTACAATCAACCACTCGGAAGCGCAAGTTTTTGGAAATTCAAGACTCTGCTCAGGCATAA 2724 0.3961 MACSSSSSLALVKKKYEVFVSFRGEDTRNSFTSFLLEALSTKCITTFRDDKELEGQPIAPGLFHAIEESRVYIVVFSKNYASSTWCLQELAKIHYECPDISSGKHVLPIFYDVDPSEVRKQSGDYGEAIAKHEERFKDDLEKMAEVQTWRQALTHVANCSGWDIRNKSHSGEMKKIVEKVVNILAYECSSPPHDLVGIQSPLQELEELLRLDLIDDVRVIGICGMGGIGKTTLANALFHKISRQFNACCFIKDVSKSHKDHGPIAAQKQILHRTLNIENLQIWDHYHASNLRRRLHLSRALIVLDNVDQDKQLQELALNREWLGVGSRIIIISRNEHILEEHGVDKVYKVPLLNPDNSLQLFCTKAFKLRGVLTDYEKLTYDILAYANGLPLAIKEKNVEVIGEPMRYITSEGEKYMIDAETLSKMSRLRLLILGKGGNISGTLNRLSNEIRYFEWLLCPLLYLPSNFQPIQLVELILQRSNIKLLWQGKKYLPNLRNLDLQWSTNLIKLPDFRQMPNLVRLDLEGCTKLVEIHPSIGVLKKLCFFHFERLCCSKVFNSPRQVKVDIVRWIAWPFQFLYPRAHNDSVISCSSPSLPSFFHLRDLDLSFCNLPQLPDAIGSLHCLETLNLTGQNFVTLPSLKGLSKLVYLNLEHCKHLEILPELPSHICAPIRIQIPFWGVYPGLYIFNCPKLGERERCTSMSYSWMKRLIQAHQESSAPYREIHVVIPGVEIPKWFNNQSQSVGVSDGEITLDLSSVMHDDNWIGMACCVVFEAQPLGGPTSSRNEWESKVCISYTDNRNGSWIYIPVILDGNLIIVESNHIWLTYIDWKCFFRSVDDLNDTTLRPEYGTNLKMKVVVNSAPSLRVEVKSFGCRWLFEQDLELFDLSLLQSTTRKRKFLEIQDSAQA. 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04692 907 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 395 IPR027417 -
Seca4g04692 907 SMART till_3 15 159 IPR000157 GO:0007165
Seca4g04692 907 Pfam C-JID domain 727 882 IPR045344 -
Seca4g04692 907 Pfam NB-ARC domain 214 395 IPR002182 GO:0043531
Seca4g04692 907 Gene3D Ribonuclease Inhibitor 416 564 IPR032675 -
Seca4g04692 907 Gene3D Ribonuclease Inhibitor 582 713 IPR032675 -
Seca4g04692 907 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 186 - -
Seca4g04692 907 Pfam TIR domain 15 180 IPR000157 GO:0007165
Seca4g04692 907 PRINTS Disease resistance protein signature 294 308 - -
Seca4g04692 907 PRINTS Disease resistance protein signature 219 234 - -
Seca4g04692 907 PRINTS Disease resistance protein signature 514 530 - -
Seca4g04692 907 PRINTS Disease resistance protein signature 387 401 - -
Seca4g04692 907 ProSiteProfiles TIR domain profile. 14 184 IPR000157 GO:0007165
Seca4g04692 907 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 395 IPR044974 GO:0006952
Seca4g04692 907 Gene3D - 12 185 IPR035897 -
Seca4g04692 907 Gene3D - 186 348 IPR027417 -
Seca4g04692 907 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 162 IPR035897 -
Seca4g04692 907 SUPERFAMILY L domain-like 418 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04692 Seca-Chr4 87326968 87331555 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04692 415 662 WRKY Transcription Factor Family AT4G12020 30.712 1.90e-16 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04692 - - gmx:100820213 453.751