Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04685 ATGGTTTCCCGGGAAAACACCAATTGGCTTTTCGATTACGCCTTGATCGATGATATTTCCGTAACCGATGCCACCTTTACTGTCCCTTCCTCCGGATTCACCTGGACCTCGCAGCCCTTGAATGCTTCTTCGAATGTCGGTGTTGAAGCCGATGGCTCATTGGGGGATTCTGATGGTGTCAAAGAGTCTGGTTCAAAGAAGAGGGTTAGATCTGAGTCGGGTGCTGCTTCTAGCTCCAAGGCATGTCGTGAGAAGTTGCGTAGAGATAAACTTAATGACAAGTGGATTTTGTGTAAATGTGTGGCTGGGGCACCTAATATGATGGACATGGTTAGGTTTGTTGAATTGGGCTCCATTTTGGAGCCTGGAAGGCCTACCAAAACAGACAAGGCTGCTATACTGATTGATGCTGTCCGAATGGTGACACAGTTACGTGGTGAAGCCCAGAAGTTGAAAGACAATAATTTGGGTCTTCAAGAAAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTCAAGGCAGAGAAAGAGAGGTTGGAGCAGCAGCTGAATTCTATGAATGCACAACCTAGTTTCTTGCCTCCCCCCGCTGCACTCCCTGCTGCATTTGCTGCACAAGGCCAAGCCCATGGCAACAAGTTGGTACCTTTTATCAGTTATCCAGGAGTTGCAATGTGGCAATTCATGCCACCTGCTGCAGTTGATACCTCACAGGATCATGTACTTCGTCCACCAGTTGCCTAA 765 0.4719 MVSRENTNWLFDYALIDDISVTDATFTVPSSGFTWTSQPLNASSNVGVEADGSLGDSDGVKESGSKKRVRSESGAASSSKACREKLRRDKLNDKWILCKCVAGAPNMMDMVRFVELGSILEPGRPTKTDKAAILIDAVRMVTQLRGEAQKLKDNNLGLQEKIKELKAEKNELRDEKQRLKAEKERLEQQLNSMNAQPSFLPPPAALPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04685 254 CDD bHLH_AtILR3_like 80 173 - -
Seca4g04685 254 Gene3D - 134 196 - -
Seca4g04685 254 Coils Coil 141 196 - -
Seca4g04685 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 163 IPR036638 GO:0046983
Seca4g04685 254 PANTHER BHLH TRANSCRIPTION FACTOR 3 254 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Seca4g04685 254 MobiDBLite consensus disorder prediction 46 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04685 Seca-Chr4 87189588 87194211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04685 1 254 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 66.148 5.14e-111 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04685 - - gmx:100788858 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04685 4 87189588 87194211 Seca4g04685 4 87189588 87194211 ECH
Seca4g04685 4 87189588 87194211 Seca4g04685 4 87189588 87194211 PCT