Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04682 ATGGTGGGGACTCCGATTAATGGAAGAACAAGGCAAGCTTTTACAGTTGTAAATGGTGGCCACGATCTTGGCCCGAGTAGTGCTCCTCCAAGCAATGCTGGATCGGATTATGGTATAATAGAGTTCACAAGAGAGGATGTGGAAGCATTGCTAAATGAAAAAGCCAAAAGGAAGGACAGATTTAATTATAAGGAAAGATGTGAAAATATGGTGGATTATATAAAAAGGCTTAAGGTTTGCATCAGATGGTTCCAAGACATTGAGATGAGTTACTCACTTGAGCAGGAAAAGTTAAAGAATTCACTGGAATTCACACAGCAAAAATGCATAGAAATTGAGTTGCTGCTTAAAATCAAGGAAGAAGAACTAAATTCAATTATTGCGGAAATGAGAAGAAATTGCACTTCTTTGCAAGAGAAATTGATTAAGGAAGAAACAGAAAAGACAGCTGCAGTGGAATCTCTTGTTAAAGAGAGAGAGGCTAGGCTTGACATCGAAAGGTCACAGAGTACTCTGTCAGAGGACCTTGGAAGAGCTCAACGAGAGATTCAAAGTGCAAATCAGAAGATATCATCACTCAATGAAATGTATAAGCGGTTACAAGATTACATTACAAGCTTACAACAGTACAATGGAAAACTTCATACAGAGCTTTCATCAGTTGAAGATGAACTTAAACGTGTAGAGAAAGAGAAGGCTACTGTAGTGGAGAATATCACCATGTTAAGGGGTCAACTTACTTTAGCCATTTCTTCTCAAGAAGAGGCCATAAAACAGAAGGATGCTCTGGCTAGTGAAGTTGCTTCTCTTAGAGGAGAGTTGCATCAAGTAAGAGATGAACGAGATCGCCAATTATCCCAAGTGCAAACTTTAAATACTGAATTATTGAAATTTAAAGAAGCTACAGAAAACTCCTCTACTGAATTGGACAGCTTGACATTAAAAGCAAGTGAACTAGAGGCAAAATGTTCTTTGAAAGATAATCAAATAAAGGCATTGCAAGAACAGCTAGCATCTGCAGAGAAGAAACTGCAGGCATCTGATATATCTGCATATGAGACAAGGACAGAATATGAAGGTCAACAAAAATTTGTGAATGAGTTACAAAGACGCTTAACAGATGCAGAATATAAACTTATTGAAGGGGAGAGGCTGCGGAAAAAATTACATAATACCATTTTGGAGTTAAAAGGGAACATCCGAGTATTCTGTCGAGTGAGGCCTTTGTTGCCTGATGAAAGTTGTGGTACAGAAGGCAAGATTTTCAGTTATCCAACATCGATGGAAGCTTCTGGTCGAAGCATTGACCTAGCTCAAAATGGCCAAAAACATTCCTTTACATTTGATAAAGTTTTTACACCAGAGGCATCACAAGAAGAAGTTTTTGTAGAAATTTCACAACTTGTACAAAGCGCTCTTGATGGTTATAAGGTTTGCATCTTTGCCTATGGTCAGACAGGGTCAGGGAAAACCTATACAATGATGGGCAGGCCTGGACATCCAGAGGAGAAGGGCTTGATACCTCGTTCATTAGAACAAATATTTCAGACGAAGCAATCTCAGCAACCTCAAGGCTGGAAATATGAAATGCAGGTGTCAATGTTGGAAATATACAATGAAACCATTCGTGATTTGATATCTACAGTATCACGCGTTGAAAATGGAACACCTGGAAAACAATATACAATTAAACATGATGCAAGTGGAAATACACAAGTTTCTGATCTTACAGTAGTGGATGTTCAAAGTGCTAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGATCTGTGGGGAAAACCCAGATGAATGAACAATCATCAAGAAGTCATTTTGTATTCACTCTTCGAATATATGGTGTAAATGAGAGCACTGACCAACAAGTACAAGGTGTTCTGAATCTTATTGATCTTGCTGGTAGTGAGCGTCTTTCGAAGAGTGGATCAACAGGGGACCGGTTGAAAGAAACTCAAGCAATCAACAAAAGTTTATCATCATTGAGTGATGTCATATTTGCCTTAGCCAAGAAGGAGGATCATGTGCCATTCAGGAACTCAAAGCTTACATATCTACTTCAACCTTGTCTGGGTGGGGACTCCAAGACACTGATGTTTGTAAACATCTCACCAGATCCTTCTTCAGTTAATGAATCACTGTGCTCATTAAGGTTTGCATCCAGAGTCAATGCTTGTGAAATTGGAACACCTCGTCGTCAGACCAATGGACGATCTACAGACTCTAGATTGAACTATTTCTGA 2265 0.389 MVGTPINGRTRQAFTVVNGGHDLGPSSAPPSNAGSDYGIIEFTREDVEALLNEKAKRKDRFNYKERCENMVDYIKRLKVCIRWFQDIEMSYSLEQEKLKNSLEFTQQKCIEIELLLKIKEEELNSIIAEMRRNCTSLQEKLIKEETEKTAAVESLVKEREARLDIERSQSTLSEDLGRAQREIQSANQKISSLNEMYKRLQDYITSLQQYNGKLHTELSSVEDELKRVEKEKATVVENITMLRGQLTLAISSQEEAIKQKDALASEVASLRGELHQVRDERDRQLSQVQTLNTELLKFKEATENSSTELDSLTLKASELEAKCSLKDNQIKALQEQLASAEKKLQASDISAYETRTEYEGQQKFVNELQRRLTDAEYKLIEGERLRKKLHNTILELKGNIRVFCRVRPLLPDESCGTEGKIFSYPTSMEASGRSIDLAQNGQKHSFTFDKVFTPEASQEEVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPGHPEEKGLIPRSLEQIFQTKQSQQPQGWKYEMQVSMLEIYNETIRDLISTVSRVENGTPGKQYTIKHDASGNTQVSDLTVVDVQSAKEVAFLLNQAANSRSVGKTQMNEQSSRSHFVFTLRIYGVNESTDQQVQGVLNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDPSSVNESLCSLRFASRVNACEIGTPRRQTNGRSTDSRLNYF. 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04682 754 Coils Coil 169 203 - -
Seca4g04682 754 Coils Coil 120 147 - -
Seca4g04682 754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 731 IPR027417 -
Seca4g04682 754 PANTHER KINESIN-LIKE PROTEIN KLP-3 253 741 IPR027640 GO:0003777|GO:0007018
Seca4g04682 754 Coils Coil 40 60 - -
Seca4g04682 754 Coils Coil 253 294 - -
Seca4g04682 754 Pfam Kinesin motor domain 405 731 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g04682 754 FunFam Kinesin-like protein 345 735 - -
Seca4g04682 754 Coils Coil 211 238 - -
Seca4g04682 754 Coils Coil 365 385 - -
Seca4g04682 754 PRINTS Kinesin heavy chain signature 475 496 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g04682 754 PRINTS Kinesin heavy chain signature 683 704 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g04682 754 PRINTS Kinesin heavy chain signature 603 620 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g04682 754 PRINTS Kinesin heavy chain signature 634 652 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g04682 754 CDD KISc_C_terminal 397 735 - -
Seca4g04682 754 ProSitePatterns Kinesin motor domain signature. 633 644 IPR019821 GO:0003777|GO:0005524|GO:0007018
Seca4g04682 754 SMART kinesin_4 397 741 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g04682 754 Coils Coil 302 350 - -
Seca4g04682 754 ProSiteProfiles Kinesin motor domain profile. 399 733 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Seca4g04682 754 Gene3D Kinesin motor domain 340 735 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04682 Seca-Chr4 87155515 87161166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04682 84 745 Calmodulin-binding Proteins AT5G65930 31.437 3.25e-80 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04682 K10405 - gmx:100784221 1353.58