Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04680 ATGGGAATTCAGAAATATATGGTTGCCGTGAAGTTTAGCTTTTGTGTTCTTTTGATTGTTCTTCTTGTAGCAGCAGTAAGCTTTATAGAAAAGAAGGAAACACATGATGAGTTTGTTAGCGAACTACTTGATTCACCATCTGGATTGTTTGATGAGCACACGGCAAAGGTACTATGGAGTACTTGCTGGGAAGATTCAATTCGTTTAAAGAAAGAGGTTGAAGATCATGATTTACGCCTCCCTCAGGAATCATCTGGTAGCACCAATAGAATTAGTTCAGAGACTCAACCATTTGTGCGAGCAGACATCCAAAAATTGATTGCTTGCCATCCTCAGTTCAAGGAAAACTTTATTCAGTGTTGGAGAAAAAATAATCTTCCATTTCATGTATCAGGAGAAGAGGATGATTTCAAGATATGGCATGTCACTTATATGGGATCACTTTTTTCGAAATCCAGTGTTCCACGAAGAAATTTGGGTCGAGTTTTGCTTCAGCACATATCAGAACCACCTAGTCCAGGTCCTGCAATTGGAGCACCTACACCTGAACCCAATTTAGCACCATCACCAGAACCCAGTCTAGCACCATCACCTGCTCCAGTGCCTCTAGGTCCTAAACCTCTGCATCCTCCTTTGTCACCAACCCCATTTTTCCCAAAACTGACACCACCAGCAATTGCAGATATTTCCTCTCCTCCATCTCCTGTCATTAACAAACAAGAAGATAAGCATAGTAACAGAAGAACAGTTGTTATTGCTGTAGTTATAACTGCATTGGTGACATTCATAGCTGCAGCATTGTTCTTTTTATACTGTAGTGGGTTTTGTAAGACGGGCCGAGTTAGGAAAAATGATGAGAGGCCCCTTCTCAGCTTGAGCATGAGCGACTTTTCTGTTGGTCCTTCCAATTATTCTTTTGGAAATTCAATAAAAGGGGAGAAAGTTGGGTTTCAGTCATCAAATGATAATTTACTAGACAACAAGAAGACCTCAGTGCAAGAAAGTCAATCAATAGGAGCTCTTACTGCTGCCGGATCACCATTTGAACTGAAACCTCCTCCTGGGAGAGTGGGAACCATACCTTCTGGAATGCCTCCTTTAAAACCTCCTCCTGGAAGGCTGAATCCTCTTCCCCCTGAACCACCTTCATTTAGGCCTTCTGGTAATGCTGCTGTACCTGCTGCTGCTGCTGCTGCTCCTGCACCTCCTCCTCGACAGCCAGGTGTTGGCAGCGCTCCACCTCCTGGTCCTCCTCCACCACCAACCTCAGCACCAACTAGTACCAAACCTGGTCCTCCTCCACCACCACCACTAGCACCAGCTGGTGCCAAACCTGGTCCTCGTCCACCACCACCACCACCACCACCCCCAGCACCAGCTGGTGCCAAACCTGGTTCTCCTCCTCCACCACCCACAGCTCCAGCTGGTGCCAAACCGGGTCCTCCTCCACCACCACCCCCAGCACCAGTTGGTGCTAAACTTGGTCCTCGTCCACCACCTCCTCCTAAGAGTGGTATAGGTCCTCCTCGACCTCCTCCTCCAATTGGCCCTAAGGTAGCTCGGCCTTTAGCAAATGTTGAGGCTGGGGCAGAAGGTGAAGCTGGTGCTCCTAAAGCCAAGCTAAAGCCTTTCTTCTGGGATAAGGTTCAAGCTAACTCAGATCATTCAATGGTTTGGAATCAGATCAAATCAGGATCATTCCAGTTTAATGAAGAGATGATAGAGACACTTTTTGGCTATAATGCTGTGGATAAAAACAACGGTCAACGGCAGAAAGAGTCTACCTCCCAAGACCCTTCACCTCAATATATCCAGATCATTGACAAAAAGAAATCGCAAAATTTATTAATTTTATTGCGAGCATTGAACGTGACAATGGAAGAAGTTTGTGATGCACTTTATGAAGGAAATGAGCTACCCTCAGAATTCCTTCAAACCTTGCTGAAGATGGCACCAACATCAGATGAAGAACTTAAGCTTAGACTTTTTAGTGGTGAACTGTCTCAACTTGGGCCTGCAGACCGATTCCTGAAAGCCTTGGTTGACATTCCGTTTGCCTTTAAGCGAATGGAAGCACTGCTTTTCATGAGTACACTTAATGAGGAGCTCACTACTACTATGGAGTCTTTTGCAGTTTTAGAGGTTGCTTGTAAGGAACTAAGAAACAGCAGGCTGTTCCTCAAGCTTCTTGAAGCTGTTCTCAAAACTGGCAACCGTATGAATGATGGAACATACCGTGGTGGTGCACAAGCATTTAAACTTGATACACTTTTAAAATTATCTGATGTAAAAGGAACAGATGGCAAAACCACACTCTTACACTTTGTTGTTCAGGAGATTATCCGCTCTGAGGGCATAAAAGCTGCTCGAGCTGCAAAAGAGAGCAAGAGTTCATCTAGTATTAAAACAGATGAAACAGAAGATCACTACCGTGAAATTGGTCTTCAGGTGGTTTCACACTTGAGCAGTGAGCTTGAGAATGTTAAAAAAGCAGCAGTTCTAGATGCTGACAGCTTAACAGCAACTGCTTCCAAACTTGCTCATGGTCTCATAAAAACCAAAAACTTGGTAAATGAAAACATGAAAAATGTGGAGGAAGATAGAGGGTTTTGTGAGACAACAAAAAGTTTTGTGCAGAATGCTGAGGTTGATGTTATGAAACTGATGGAAGAAGAGAAGAAAATCATGGCTCTGGTGAAGAGCACTGGTGATTACTTTCATGGGAATGCTGGGAAGGATGAAGGCTTAAGATTGTTTGTAGTAGTAAGAGACTTCATAATAATGCTGGATAAGGTATGCAAGGAAGTGAGAGAAGCACAGAAGAGAGCAGCAAAAACTCTAAAACAAGAAACTTCTCGAGGATCATCTTCGTCTGAAACGCGTCCACCACCTTCTGATTTTCGTCAGCGGCTTTTTCCAGCGATTGCTGAAAGGAGGATGGGTGACTCTAGTTCAGATGATGAGAGTCCATAG 2973 0.442 MGIQKYMVAVKFSFCVLLIVLLVAAVSFIEKKETHDEFVSELLDSPSGLFDEHTAKVLWSTCWEDSIRLKKEVEDHDLRLPQESSGSTNRISSETQPFVRADIQKLIACHPQFKENFIQCWRKNNLPFHVSGEEDDFKIWHVTYMGSLFSKSSVPRRNLGRVLLQHISEPPSPGPAIGAPTPEPNLAPSPEPSLAPSPAPVPLGPKPLHPPLSPTPFFPKLTPPAIADISSPPSPVINKQEDKHSNRRTVVIAVVITALVTFIAAALFFLYCSGFCKTGRVRKNDERPLLSLSMSDFSVGPSNYSFGNSIKGEKVGFQSSNDNLLDNKKTSVQESQSIGALTAAGSPFELKPPPGRVGTIPSGMPPLKPPPGRLNPLPPEPPSFRPSGNAAVPAAAAAAPAPPPRQPGVGSAPPPGPPPPPTSAPTSTKPGPPPPPPLAPAGAKPGPRPPPPPPPPPAPAGAKPGSPPPPPTAPAGAKPGPPPPPPPAPVGAKLGPRPPPPPKSGIGPPRPPPPIGPKVARPLANVEAGAEGEAGAPKAKLKPFFWDKVQANSDHSMVWNQIKSGSFQFNEEMIETLFGYNAVDKNNGQRQKESTSQDPSPQYIQIIDKKKSQNLLILLRALNVTMEEVCDALYEGNELPSEFLQTLLKMAPTSDEELKLRLFSGELSQLGPADRFLKALVDIPFAFKRMEALLFMSTLNEELTTTMESFAVLEVACKELRNSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGIKAARAAKESKSSSSIKTDETEDHYREIGLQVVSHLSSELENVKKAAVLDADSLTATASKLAHGLIKTKNLVNENMKNVEEDRGFCETTKSFVQNAEVDVMKLMEEEKKIMALVKSTGDYFHGNAGKDEGLRLFVVVRDFIIMLDKVCKEVREAQKRAAKTLKQETSRGSSSSETRPPPSDFRQRLFPAIAERRMGDSSSDDESP. 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04680 990 MobiDBLite consensus disorder prediction 173 206 - -
Seca4g04680 990 MobiDBLite consensus disorder prediction 358 386 - -
Seca4g04680 990 SUPERFAMILY Formin homology 2 domain (FH2 domain) 601 954 - -
Seca4g04680 990 MobiDBLite consensus disorder prediction 972 990 - -
Seca4g04680 990 PANTHER FORMIN-RELATED 22 986 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Seca4g04680 990 Gene3D Formin, FH2 domain 536 961 IPR042201 -
Seca4g04680 990 MobiDBLite consensus disorder prediction 397 519 - -
Seca4g04680 990 MobiDBLite consensus disorder prediction 944 990 - -
Seca4g04680 990 SMART it6_source 531 944 IPR015425 -
Seca4g04680 990 MobiDBLite consensus disorder prediction 949 964 - -
Seca4g04680 990 MobiDBLite consensus disorder prediction 343 520 - -
Seca4g04680 990 Pfam Formin Homology 2 Domain 534 929 IPR015425 -
Seca4g04680 990 PRINTS Proline rich extensin signature 189 201 - -
Seca4g04680 990 PRINTS Proline rich extensin signature 212 233 - -
Seca4g04680 990 PRINTS Proline rich extensin signature 361 386 - -
Seca4g04680 990 PRINTS Proline rich extensin signature 168 184 - -
Seca4g04680 990 PRINTS Proline rich extensin signature 393 405 - -
Seca4g04680 990 Coils Coil 929 949 - -
Seca4g04680 990 MobiDBLite consensus disorder prediction 166 206 - -
Seca4g04680 990 ProSiteProfiles Formin homology-2 (FH2) domain profile. 531 955 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04680 Seca-Chr4 87054407 87061004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04680 230 980 FH2 protein (formin) Gene Family AT5G54650 53.728 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04680 - - gmx:100793413 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04680 4 87054407 87061004 Seca4g04680 4 87054407 87061004 ECH
Seca4g04680 4 87054407 87061004 Seca4g04680 4 87054407 87061004 PCT