Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04676 ATGAGAGAGGAGTCAATAGGACTGATTATTGGGGTTTCCATAGGTGTTGTTATTGGCATTGTTTTAGCAATTTTTGCATTCTTCTGTCATAGGTGCCATCGAAAGCGTTCACAGATAGGCAATAGCAGTTCCAGGAGGGCTGCTACCATACCCATCCGCACAAATGGTGTTGATTCTTGTACTATTCTGTCAGACTCAACCATAGGTCCAGAGTCCCCTGTAAAATCAGGACGCAATGGCATGTCCTTTTGGCTTGATGGGTTTAAGAAGAGTAACAACATGGTTTCAGCATCTGGACTACCTGAATATGCATACAAGGATTTGCAGAAGGCAACATATAATTTTACTACAGTCATAGGACAAGGTGCTTTTGGTCCTGTTTATAAAGCTCAGATGCCTACTGGTGAGACTCTTGCAGTTAAAGTTCTCGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCACACAGAGGTTATGTTATTGGGAAGGTTACACCATAGAAATCTGGTGAATTTGATAGGATATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTCTACATGAGCAAGGGTAGCTTGGCTTCGCACCTGTATTGTGATGTGAATGAAGCACTGTGCTGGGATTTGAGGGTTCACATAGCTTTAGATGTAGCAAGAGGCTTGGAGTATCTCCATGATGGGGCAATTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAATATTCTGTTGGACCAATCCATGAGAGCCAGGGTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGTAGATAAACATGCAGCTATTCGGGGTACATTTGGTTACCTTGACCCCGAGTACATATCTTCAGGAACATTCACAAAGAAAAGTGATGTGTACAGTTTTGGGGTGTTGCTCTTTGAAATTATAGCTGGCAGAAACCCACAGCAGGGTCTAATGGAATATGTTGAGCTTGTAAGACCTCTTTTTCTCCCTTCAAGCTACACTGCAGCAATGAATACTGAGGGAAAAGTTGGTTGGGAGGAGATTGTGGATTCTCACCTTGAAGGAAACTTTGATGTGCAAGAACTAAATGAAGTGGCAGCACTTGCCTATAAATGCATCAACCGTGCCCCAAGTATGCGCCCTTCTATGAGGGACATAGTACAAGTGTTAACAAGGATCCTTAAATCAAGGCACCATAGAAATCATCACAAGAACGCCTTGTCAGCCACAGCAGATGAAGTTTACATTGATCCTGATCAGCTAGAAACCAAGATTTCTGTTACAGATCACCACCAGAGAGAAGAATCTATGGAGAGTGCAGTAGACACATATGAAGTGTAG 1329 0.4244 MREESIGLIIGVSIGVVIGIVLAIFAFFCHRCHRKRSQIGNSSSRRAATIPIRTNGVDSCTILSDSTIGPESPVKSGRNGMSFWLDGFKKSNNMVSASGLPEYAYKDLQKATYNFTTVIGQGAFGPVYKAQMPTGETLAVKVLATNSKQGEKEFHTEVMLLGRLHHRNLVNLIGYCAEKGQHMLVYVYMSKGSLASHLYCDVNEALCWDLRVHIALDVARGLEYLHDGAIPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFEIIAGRNPQQGLMEYVELVRPLFLPSSYTAAMNTEGKVGWEEIVDSHLEGNFDVQELNEVAALAYKCINRAPSMRPSMRDIVQVLTRILKSRHHRNHHKNALSATADEVYIDPDQLETKISVTDHHQREESMESAVDTYEV. 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04676 442 SMART serkin_6 113 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04676 442 ProSiteProfiles Protein kinase domain profile. 113 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04676 442 FunFam calcium/calmodulin-regulated receptor-like kinase 1 189 408 - -
Seca4g04676 442 Gene3D Phosphorylase Kinase; domain 1 84 188 - -
Seca4g04676 442 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 86 188 - -
Seca4g04676 442 Pfam Protein tyrosine and serine/threonine kinase 115 386 IPR001245 GO:0004672|GO:0006468
Seca4g04676 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Seca4g04676 442 SUPERFAMILY Protein kinase-like (PK-like) 105 397 IPR011009 -
Seca4g04676 442 CDD STKc_IRAK 119 389 - -
Seca4g04676 442 PANTHER OS01G0750732 PROTEIN 5 401 - -
Seca4g04676 442 Gene3D Transferase(Phosphotransferase) domain 1 189 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04676 Seca-Chr4 86984700 86989642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04676 27 386 Glycoside Hydrolase AT3G07070 39.474 6.94e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Seca4g04676 PK_Tyr_Ser-Thr 2.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04676 - - gmx:100785634 746.117