Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04668 ATGGACTCAGAGCAGTTTTTTAGTTTCAGTGTGACTAGTTCAGCAGGAGTACCTTACTCATCATCTTATCCTACCATCTCACCAATACACAACCGGCTGCTTGGATCCTTGAAACTTGACATAGGAAGCTCACCTAATTCAGCACTTTCAACTCATTTTGATTCTGATACTCTTTCTTCATTGAGTGACAGCCAGGAGCAGCACAGCTCTAGGGAATCCCTCTCCGGTGCCAGCCCTTCTTCTAACTCTTGGCTAGAAAGCAATCTCCATTTGCATAGGCCAGTCCCTCTCCAAGAGGGTTTACATCTATCTGCTAGGAGCTCTCTTCCACAGGGTACAAGTTGTTACAATGAAACCAGACACGCGTTGCTGGAACTAGAAACTGCTTTGATGGCACATGATAGTGGTGATGATGAAGTTACCACATCAAATACTTCTTTGTGTGGTAGCAGCAGGCCAACCTCATCTAGCCAAAGAAATATGTCCTGGAGCCATGATCCCCAAAGGTCAGAATATATTCAAAGTGAAATTGCACGTGTAGAGAAACGTCACAAATCAATGGAGGAAGCATCTTCATCACTACAAGGCTTCCCATCAAGCAATTTGAAACAATTACTGATTCTATGTGCCAAAGCCCTGTCTGAAAACAACATGAAAGATTTTGATCAATTGATAGAAAAGGCTAAAAGTGCTGTGTCCATAAGTGGGGAGCCAATACAACGGCTTGGTGCTTATTTGGTAGAAGGTCTTGTTGCAAGGAAGGAGGCATCAGGGAATAACATCTACCGTGCCCTTAGGTGCAGAGAGCCTGAGGGCAAAGACTTACTCTCTTACATGCAGCTACTGTATGATGTCTGCCCATACTTCAAATTTGGTTACATGGCTGCAAATGGGGCTATTGCTGAAGCTTGCAGAAATGAGGATCACATTCACATCATAGACTTCCAAATTGCTCAGGGAACTCAATGGATGACTCTCCTCCAAGCTCTTGCAGCAAGACCTGGTGGGGCTCCACATGTGAGGATCACTGGGATTGATGATCCTGTTTCTAGATATGCTCGTGGTGATGGACTAGAGGCAGTTGGGAAAAAATTGGCCATATTCTCTCAGAAGTTTAACATCCCAATTGAGTTCCATGGTGTGCCTGTTTTAGCTCCAAATGTGACTAGGGACATGCTTGATGTTAGGCCTGGAGAGGCTTTAGCTGTGAACTTTCCTTTGCAACTGCATCACACTGCTGATGAGAGTGTTGATATGAATAATCCAAGGGATGAACTTCTGAGAATGGTGAAATCACTTTCTCCTAAGGTAGTTACATTAGTGGAGCAGGAATCAAACACCAATACAACTCCTTTCTTCAACAGGTTCATAGAAACCTTGGATTACTACTTGGCAATGTTTGAGTCCATTGATGTCACACTCCCAAGGAAGAGCAAGGAGAGGATTAATGTGGAGCAACATTGTTTGGCAAGGGATATTGTCAACATCATTGCCTGTGAAGGGAAGGAAAGAATAGAGCGACATGAACTGTTTGGCAAGTGGAAGTCTAGATTGACAATGGCTGGCTTCCATCAATATCCTTTGAGTTCTTATGTGAATTCTGTTATAAGAAGTCTGCTGAGGTGCTATTCGGAACATTATAGTCTTGTGGAGAAGGATGGGGCCATGTTGTTGGGATGGAAAAACAGAAATTTGATATCAGCTTCAGCCTGGCATTGA 1719 0.4363 MDSEQFFSFSVTSSAGVPYSSSYPTISPIHNRLLGSLKLDIGSSPNSALSTHFDSDTLSSLSDSQEQHSSRESLSGASPSSNSWLESNLHLHRPVPLQEGLHLSARSSLPQGTSCYNETRHALLELETALMAHDSGDDEVTTSNTSLCGSSRPTSSSQRNMSWSHDPQRSEYIQSEIARVEKRHKSMEEASSSLQGFPSSNLKQLLILCAKALSENNMKDFDQLIEKAKSAVSISGEPIQRLGAYLVEGLVARKEASGNNIYRALRCREPEGKDLLSYMQLLYDVCPYFKFGYMAANGAIAEACRNEDHIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSRYARGDGLEAVGKKLAIFSQKFNIPIEFHGVPVLAPNVTRDMLDVRPGEALAVNFPLQLHHTADESVDMNNPRDELLRMVKSLSPKVVTLVEQESNTNTTPFFNRFIETLDYYLAMFESIDVTLPRKSKERINVEQHCLARDIVNIIACEGKERIERHELFGKWKSRLTMAGFHQYPLSSYVNSVIRSLLRCYSEHYSLVEKDGAMLLGWKNRNLISASAWH. 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04668 572 ProSiteProfiles GRAS family profile. 193 572 IPR005202 -
Seca4g04668 572 MobiDBLite consensus disorder prediction 137 167 - -
Seca4g04668 572 Pfam GRAS domain family 202 571 IPR005202 -
Seca4g04668 572 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 161 568 IPR005202 -
Seca4g04668 572 MobiDBLite consensus disorder prediction 52 85 - -
Seca4g04668 572 MobiDBLite consensus disorder prediction 135 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04668 Seca-Chr4 86865456 86867174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04668 117 571 GRAS Transcription Factor Family AT5G48150 57.018 3.74e-180 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca4g04668 GRAS 2.4e-130 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04668 - - gmx:100775665 902.123