Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04660 ATGGTCATTCTACCTTTGATACTTGTTATTGTCAAGTTACTTTCGTTTCCATCCCAAATTTCCTCTGAAACTGATACTATTACCCAATTTCAGTCACTCTCTGATGGAAAAACTTTGGTTTCACAGGATGGCACATTTGAGTTAGGCTTCTTCACTCCAGGTACGTCCTCTAGAAACCGCTACTTAGGAATCTGGTTCAAAAAAGTCTCAGTAAAAACCGTTGTTTGGGTCGCCAACCGTGACCATCCAATCAATGACAATTCAAGCTACCACTTGAGCATAACCAAAGAAGGAAACCTTGTCCTTCTCAACAAGAACGGCAGCACAATTCACTGGTCAACAAATACAACAACAAAAGGTGTGATAGCGCAGCTCTTAGGCTCTGGCAATTTGGTTCTAAGAGAAGATAGTAAAAAAGACATCAATGATAGCGAAGGTTACTTGTGGCAGAGCTTTGACTATCCTAGTGACACAATTTTACCTGGAATGAAGCTAGGATGTAACCTAACAAGTGGCCTTAACAGGCGCCTAACAGCTTGGAAGAACTGGGATGATCCATCTTCAGGCCACCTTACTTTTGGCTTCACAAGAAGCAAAAATAATCCTGAACAACAAATGTGGAATGGCTCATCAATGCTCTACAGAAGTGGCCCTTGGAATGGCATTCGGTTCAGCGCTACACAATTATTGAAGCACCGTCCATTGTTCCATGTAGATTTTGTGTACAAAAATGATCAGTATTATTATTTCCAATATAACCCCTTAGTTCCGTCATTGATTTCCAGAATTGTCATCAACCAAACTGTTTACTCTCTTCAGCGCTTGACTTGGGCGGAAGAGAATCAAACATGGAAGCTGTATTTGAATGTTCCAAGAGATGACTGTGACAACTATAACCGTTGTGGCTCATTCGGTATCTGCGGTATGAGTGGTACTAAGCCCCCAGTGTGCGAGTGTTTAAGCGGATTCACACCACAAAACAGAGACAGGAGTCAAGGATGCGTGCGCAGTGAAACTTGGAGGTGTAGAGAAAAGAATAAAGACGGTTTCATCAGATTTCAAAACTTGAAGCTCCCTGACACTAACAAATCTTGGATTGATGCAAGTATAACACTGGAGGAATGCAAGGCCAAATGTTGGAAGAATTGTTCCTGTACTGCTTATGCAAACTCAGACATCACTGGAGCAGGAAGTGGTTGTATCATTTGGTTCGGTGATCTATTGGACTTGAGACAAGTGCCAAATGTTGGCCAAGATTTGTATGTTAGATTCGAGGAAACGAGGATCATCAAGACGAAAGTAAAGAAAAACGAAAGCCAGCAAGAAGATTTGGAACTGCCTTTGTTTGACCTTGATACAATAGTTTCTGCTACTGATGACTTCTCAAATGAAAAGAAGCTTGGTGAAGGTGGTTTTGGTCCAGTATATAGTGGTACATTACATGATGGACAAGATGTCGCTATTAAAAGGCTTTCAAATAGCTCTGCACAAGGAATAAGAGAATTTAAGAATGAGGTTATATTTTGTTCTAAACTGCAACACCGAAACCTGGTTAAGGTCCTTGGCTTTTGCAATGAAGAGCAAGAGAAATTACTTGTCTATGAATATATGCCCAATAAAAGCTTAGATTTCTTTCTTTTTGATTCTTCTCAAAGAAAATTTTTAGACTGGTCTAGACGATTCAACATTATTAGTGGAATTGCTCGAGGGCTTCTTTACCTTCATCAAGACTCCAGATTTAGAATCATACATAGGGATTTAAAAGCAAGTAATATTTTATTAGATAATGATATGAATCCCAAAATTTCTGATTTTGGCTTGGCTCGGATGTGTGGAGGTGATCAAATTGAAGGGAACACAAGCAAAGTTGTTGGTACATATGGATATATGGCACCTGAATATGCAATTGACGGGATATTCTCCATCAAATCTAATGTATATAGCTTTGGAATTTTATTACTAGAGATTTTAAGTGGAAAAAAAAATAAAGGACTTTCCTATTCAAGCAACAGCTACAATCTTATCGGGCATGCTTGGAGGTTATGGAAAGAGTGTGTCCCATTGGAATTCATTGATACATGTTTAGAGGACTTGTATATTCCATCAGAAGCCTTACGATGA 2121 0.3932 MVILPLILVIVKLLSFPSQISSETDTITQFQSLSDGKTLVSQDGTFELGFFTPGTSSRNRYLGIWFKKVSVKTVVWVANRDHPINDNSSYHLSITKEGNLVLLNKNGSTIHWSTNTTTKGVIAQLLGSGNLVLREDSKKDINDSEGYLWQSFDYPSDTILPGMKLGCNLTSGLNRRLTAWKNWDDPSSGHLTFGFTRSKNNPEQQMWNGSSMLYRSGPWNGIRFSATQLLKHRPLFHVDFVYKNDQYYYFQYNPLVPSLISRIVINQTVYSLQRLTWAEENQTWKLYLNVPRDDCDNYNRCGSFGICGMSGTKPPVCECLSGFTPQNRDRSQGCVRSETWRCREKNKDGFIRFQNLKLPDTNKSWIDASITLEECKAKCWKNCSCTAYANSDITGAGSGCIIWFGDLLDLRQVPNVGQDLYVRFEETRIIKTKVKKNESQQEDLELPLFDLDTIVSATDDFSNEKKLGEGGFGPVYSGTLHDGQDVAIKRLSNSSAQGIREFKNEVIFCSKLQHRNLVKVLGFCNEEQEKLLVYEYMPNKSLDFFLFDSSQRKFLDWSRRFNIISGIARGLLYLHQDSRFRIIHRDLKASNILLDNDMNPKISDFGLARMCGGDQIEGNTSKVVGTYGYMAPEYAIDGIFSIKSNVYSFGILLLEILSGKKNKGLSYSSNSYNLIGHAWRLWKECVPLEFIDTCLEDLYIPSEALR. 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04660 706 ProSiteProfiles EGF-like domain profile. 291 329 IPR000742 -
Seca4g04660 706 ProSiteProfiles Protein kinase domain profile. 461 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04660 706 SMART ntp_6 345 424 IPR003609 -
Seca4g04660 706 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 7 663 - -
Seca4g04660 706 Pfam Protein tyrosine and serine/threonine kinase 463 662 IPR001245 GO:0004672|GO:0006468
Seca4g04660 706 Gene3D Hepatocyte Growth Factor 342 423 - -
Seca4g04660 706 CDD B_lectin 31 155 IPR001480 -
Seca4g04660 706 ProSiteProfiles Bulb-type lectin domain profile. 24 146 IPR001480 -
Seca4g04660 706 ProSiteProfiles PAN/Apple domain profile. 342 425 IPR003609 -
Seca4g04660 706 Pfam S-locus glycoprotein domain 214 327 IPR000858 GO:0048544
Seca4g04660 706 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 537 706 - -
Seca4g04660 706 PIRSF SRK 425 706 IPR024171 GO:0004674
Seca4g04660 706 PIRSF SRK 1 443 IPR024171 GO:0004674
Seca4g04660 706 Gene3D Transferase(Phosphotransferase) domain 1 537 706 - -
Seca4g04660 706 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 341 424 - -
Seca4g04660 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 582 594 IPR008271 GO:0004672|GO:0006468
Seca4g04660 706 SMART serkin_6 461 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04660 706 SUPERFAMILY Protein kinase-like (PK-like) 441 691 IPR011009 -
Seca4g04660 706 Pfam D-mannose binding lectin 73 181 IPR001480 -
Seca4g04660 706 Gene3D Phosphorylase Kinase; domain 1 424 536 - -
Seca4g04660 706 SMART blect_4 30 155 IPR001480 -
Seca4g04660 706 Gene3D - 18 152 IPR036426 -
Seca4g04660 706 Pfam PAN-like domain 342 410 IPR003609 -
Seca4g04660 706 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 186 IPR036426 -
Seca4g04660 706 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 152 - -
Seca4g04660 706 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 425 536 - -
Seca4g04660 706 CDD PAN_AP_plant 343 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04660 Seca-Chr4 86534522 86539268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04660 449 706 Receptor kinase-like Gene Family AT4G11530 60.618 6.96e-106 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g04660 PK_Tyr_Ser-Thr 2.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04660 - - gmx:100792537 939.873