Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04649 ATGGCGATGAGGGCGGCGGCGGCGCCCCGCGGTTTGCGGCGGCTTTTCTGCACCAACTCAACCTCTTCTTCTCCTTCTTTCCCTTTCGTTCCAACGCCGCCTTCGGGAACGGCTCCCACTCGACAGATGGCGGAGCCCAGCACCAACCTCTTCGTCTCTGGGCTCAGCAAACGTACTACAACAGAAAGGCTACAGGAAGAATTTTCAAAGTTTGGTCAAGTTGTTCATGCTAGGGTGGTAACTGATCGAGTGTCAGGTTACTCTAAGGGGTTTGGATTTGTGAAATATGCTACTATAGAAGAGGCTGCTAAGGGCATTGAAGGGATGGATGGCAAGTTTTTGGATGGTTGGGTTATATTTGCAGAGTATGCAAGACCAAGACCACCACCGGGACAACAACCTGTAAATAATATGACCAATCAGTATGGCCGGCAGTAA 438 0.5068 MAMRAAAAPRGLRRLFCTNSTSSSPSFPFVPTPPSGTAPTRQMAEPSTNLFVSGLSKRTTTERLQEEFSKFGQVVHARVVTDRVSGYSKGFGFVKYATIEEAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQQPVNNMTNQYGRQ. 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04649 145 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 126 IPR000504 GO:0003723
Seca4g04649 145 SMART rrm1_1 49 122 IPR000504 GO:0003723
Seca4g04649 145 PANTHER NUCLEOLAR PROTEIN 8 31 131 - -
Seca4g04649 145 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 116 IPR000504 GO:0003723
Seca4g04649 145 MobiDBLite consensus disorder prediction 21 55 - -
Seca4g04649 145 SUPERFAMILY RNA-binding domain, RBD 26 137 IPR035979 GO:0003676
Seca4g04649 145 MobiDBLite consensus disorder prediction 125 145 - -
Seca4g04649 145 Gene3D - 19 134 IPR012677 -
Seca4g04649 145 MobiDBLite consensus disorder prediction 36 55 - -
Seca4g04649 145 FunFam RNA recognition motif-containing protein 28 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04649 Seca-Chr4 86222621 86227697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04649 47 125 Eukaryotic Initiation Factors Gene Family AT4G34110 37.975 2.63e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04649 - - psat:127105180 232.261