Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04641 ATGCATCTTTCCCTGCACAACCAAGGAGAAGAAAGGCGTATACCCACACCCTCCAACTCCAAGGTAAAAAAGGCCAGGCCCCGTAGCTCTAAGAAAAAACCCAAGCCACCCATCCTAATCAAAAATGACATTGTTGAAGTCAACACCAAGTTTTCTTCCCGTCAAGGTGTCGATATCTCAGTACTAAGTTTTTCTGGTTCTGTCTCGAATGTTACCCTTCACCACCCTCTTTCCGATATCACTCCTCCTTTCTCTTTTATCGGGAACTTGAACATTATATCTCTTAATGGTACTTACATAAGTGGTGTTTTTACTCCAGTCTCCCATACCCTTGCTTGTTCCTCCTTTTTCATTAACTTCTTTTTATCATGA 372 0.4194 MHLSLHNQGEERRIPTPSNSKVKKARPRSSKKKPKPPILIKNDIVEVNTKFSSRQGVDISVLSFSGSVSNVTLHHPLSDITPPFSFIGNLNIISLNGTYISGVFTPVSHTLACSSFFINFFLS. 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04641 123 Gene3D - 40 116 - -
Seca4g04641 123 SUPERFAMILY AF0104/ALDC/Ptd012-like 42 101 - -
Seca4g04641 123 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 42 110 IPR014476 GO:0003680
Seca4g04641 123 CDD DUF296 43 109 IPR005175 -
Seca4g04641 123 MobiDBLite consensus disorder prediction 1 36 - -
Seca4g04641 123 Pfam Plants and Prokaryotes Conserved (PCC) domain 42 101 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04641 Seca-Chr4 85880012 85881832 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04641 24 100 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 32.632 1.79e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04641 - - jre:108994602 66.6254