Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04638 ATGGATGATTTGGAACTCCCATTGTTTGATTTGTCAACAATTATTACTGCAACTAATAACTTCTCAGAGAAGAACAAGATTGGAGAAGGTGGTTTTGGACCCGTATATTGGGGAAAGTTAGCAAATGGGCAAGAAATTGCTATAAAGAAACTTTCACAGAGCTCGAGACAAGGGGCGTCTGAGTTCATAAATGAAGTAAAACTCATTGCAAAACTTCATCGAAATCTTTGGCCAAAACGATTCAACATAATATTAGGAATTGCTCGAGGTCTTTTGTATCTCCACCAAGATTCTCGATTGAGAATTGTCCATAGAGATCTCAAAGCAGGTAATGTTTTACTTGATGATAACTTGAATCAAAAAATTTCAGATTTTGGAATGGCCAAAGCTTTTGGTGAAGACCAAATTGAAGGACACACAATTAGAGTTGTTGGAACTCATGGGTACATGGTGCCAGAATATATGGTTGGTGGATTATTTTCAATTAAATCTGATGTGTTTAGCTTTGGTATTTTCTTATTGGAGATTATATGTGGGAACAGAAATAGAGCTCTTTATCATGCAAACAAAAGCCTTAACCTTGTTGGTTATGCATGGACACTTTGGAAAGAGGGCAGGACTATGAAGTTGTTTGAGGCAAGCATAAAAGATTCATATATTGTCTCTGAAGTATTGCGATGCATTCATATTAGTTTATTGTGTGTGAAAAAATACCCTGAGGATAGGCCTACCATGACCTTAGTCATTCGAATGTTGGAGGACGAGATGGAATTAGTTGACCCCAAAGAGCCTAGTTTCTTTCCAATGAAGGATTTTGTAGAACCAGAGTTGCGCTCAAATGAGAACCAAATATGTTCAAAAAACACATTCACTATCTCAATATTAAATGGTAGGTGA 897 0.3668 MDDLELPLFDLSTIITATNNFSEKNKIGEGGFGPVYWGKLANGQEIAIKKLSQSSRQGASEFINEVKLIAKLHRNLWPKRFNIILGIARGLLYLHQDSRLRIVHRDLKAGNVLLDDNLNQKISDFGMAKAFGEDQIEGHTIRVVGTHGYMVPEYMVGGLFSIKSDVFSFGIFLLEIICGNRNRALYHANKSLNLVGYAWTLWKEGRTMKLFEASIKDSYIVSEVLRCIHISLLCVKKYPEDRPTMTLVIRMLEDEMELVDPKEPSFFPMKDFVEPELRSNENQICSKNTFTISILNGR. 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04638 298 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 77 279 - -
Seca4g04638 298 Gene3D Transferase(Phosphotransferase) domain 1 72 264 - -
Seca4g04638 298 ProSiteProfiles Protein kinase domain profile. 1 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04638 298 ProSitePatterns Serine/Threonine protein kinases active-site signature. 102 114 IPR008271 GO:0004672|GO:0006468
Seca4g04638 298 SMART serkin_6 21 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04638 298 SUPERFAMILY Protein kinase-like (PK-like) 6 252 IPR011009 -
Seca4g04638 298 Gene3D Transferase(Phosphotransferase) domain 1 8 71 - -
Seca4g04638 298 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 62 260 - -
Seca4g04638 298 Pfam Protein tyrosine and serine/threonine kinase 79 251 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04638 Seca-Chr4 85788150 85789556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04638 9 267 Receptor kinase-like Gene Family AT3G45860 48.013 2.21e-93 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g04638 PK_Tyr_Ser-Thr 1.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04638 - - gmx:100807748 409.453