Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04631 ATGGATGATTTGGAACTCCCATTGTTTGATTTGTTAACAATTATTACTGCAACTAATAACTTCTCAGAGAAGAACAAGATTGGAGAAGGTGGTTTTGGACCCGTATATTGGGGAAAGTTAGCAAATGGGCAAGAAATTGCTATAAAGAGACTTTCACAGAGCTCGAGACAAGGGGCGTATCATACCAAAGGTAAATCGTTACAGTGGCCAAAATGCTTCAACATAATATTAGGAATTGCTCGAGGTCTATTGTATCTCCACCAAGATTCTCGATTGAGAATTGTCCATAAAGATCTCAAAGCAGGTAATGTTTTACTTGATGATAACTTGAATCCAAAAATTTCAGATTTTGGAATGGCCAAAGCTTTTGGTGAAGACCAAATTGAAGGAAACACAAATAGAGTTTTTGGAACCCATGGGTACATGGCACCAGAATATATCGTTGGTGGATTATTTTCAATTAAATCTGATGTGTTTAGCTTTGGTATTTTATTGTTGGAGATTATATGTGGGAACAGAAATAGAGCTCTTTATCATCCAAACAAAAGCCTTAACCTTGTTGGTTATGAATGGACACTTTGGAAAGAGGGCAGGGCTATGGAGTTGTTTGATGCAAGCATAAAAGATTCATATATTGTCTCTGAAGTATTGCGATGCATTCATATTAGTTTATTGTGTGTACAAAAATACCCTGAGGATAGGCCTACCATGACCTTTGTCATTCGAATGTTGGGGAATGAGATGGAATTAGTTGACCCCAAAGAGCCTAGTTTCTTTCCAATGAAGGATTTTGTAGAAACAGAGTTGCGCTCAAATGAGAACCAAATGTGTTCAAACAACACATTCACTATCTCAATATTAAATGGTAGGTGA 873 0.3688 MDDLELPLFDLLTIITATNNFSEKNKIGEGGFGPVYWGKLANGQEIAIKRLSQSSRQGAYHTKGKSLQWPKCFNIILGIARGLLYLHQDSRLRIVHKDLKAGNVLLDDNLNPKISDFGMAKAFGEDQIEGNTNRVFGTHGYMAPEYIVGGLFSIKSDVFSFGILLLEIICGNRNRALYHPNKSLNLVGYEWTLWKEGRAMELFDASIKDSYIVSEVLRCIHISLLCVQKYPEDRPTMTFVIRMLGNEMELVDPKEPSFFPMKDFVETELRSNENQMCSNNTFTISILNGR. 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04631 290 Gene3D Transferase(Phosphotransferase) domain 1 8 57 - -
Seca4g04631 290 SUPERFAMILY Protein kinase-like (PK-like) 6 260 IPR011009 -
Seca4g04631 290 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 57 252 - -
Seca4g04631 290 Gene3D Transferase(Phosphotransferase) domain 1 58 255 - -
Seca4g04631 290 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 4 59 - -
Seca4g04631 290 ProSiteProfiles Protein kinase domain profile. 1 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04631 290 ProSitePatterns Serine/Threonine protein kinases active-site signature. 94 106 IPR008271 GO:0004672|GO:0006468
Seca4g04631 290 SMART serkin_6 21 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04631 290 Pfam Protein tyrosine and serine/threonine kinase 64 243 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04631 Seca-Chr4 85701562 85702970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04631 9 275 Receptor kinase-like Gene Family AT4G23280 52.045 6.95e-91 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g04631 PK_Tyr_Ser-Thr 3.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04631 - - gmx:100807748 405.986