LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g04630	ATGTTGCCAGGGATGAAGGTAGGATGGGATCTCAAGAGAAATCTGAATAGGCGTCTCAGAGCATGGAAGAGTGATGATGATCCAACCCCAGGGGATCTTACTTGGGGTTTCGTTCTGCATCCCTATCCTGAAATCTATATGATGAATGGAGAAACAAAGCACCACAGACTTGGTCCATGGAATGGCTTGCGTTTTAGTGGCATGCCAGAGCTGAAGCCTAATTCCCTTTTTAACTACAATTATGTCTCTGATGAGGAAGAGGTTAGTTACACATGGAGCCTCAAGGATAATTCTCTAATATCAAAAGTGATACTTAACCAATCCACTCATGAACGTCCTCGCTATGTATGGTCAAAGATTGATAAATCATGGAATCTTCATTCAACAATGCCAGCAGACATCTGTGATAATTATGGCCGATGTGGACCCAATGGATATTGCTGCATTACTAATTCACCAATGTGTGACTGTTTAAGAGGGTTCAAGCCTAAGTCTCCTGAAGCATGGAAGTCAATGGATTGGTCGCAAGGGTGTGTCCGGAATCCTCCATTAAACTGCAAAGATGATGGGTTTCTCCCAGTGGATGGCTTGAAATTGCCAGATACTAGTAATACTTCAGTGGTTGAGACTATGAATCTACTGCAATGTAAAGCCAAATGCTTGAATAATTGTACTTGCATGGCCTATACACATTCAAATATAAGCGGAGAAGGGAGTGGTTGTGTTATGTGGTTTGGTGATCTAATTGATATCAAAAAGTTTCCAGATGGTGGGCAGATTCTATATATACGGATGCCTGCTTCAGAATTAGTCACCAATAATACAGGGGACGGGAACAAGTGGAACTCGAGAATATTTTTTGTAACTGCTGCCTCTGTAGCTTCGGGAATGTTTTTACTTGCAATTTATTTTATCATCAGATTCCAGAGGAGCAATGTTACTGGTAAAATTTTTTCAGAGAACTCAAATGAAAGACATGTGGATCATTTAGATCTCCCATTGTTTGATTTCCAAACAATTATTATTGCCACTGACAACTTCTCAGAGAAGAACAAGATTGGAGAAGGTGGTTTTGGACCTGTATATTGGGGGAAATTAGCGGATGGGCTAGAAATTGCTGTAAAGAGACTTTCACAGAGCTCGGGACAAGGGATGAGTGAGTTCATAAATGAAGTAAAACTTATCGCAAATCTTCAACATCGAAATCTTGTAAAGCTTCTTGGTTGTTGCTTACAGAGACATGAAAAAATGCTTATTTATGAATACATGGTTAATGGCAGCCTAGACTACTTCATTTTCGATCATACCAAAGGTAAAGTTCTTGATTGGCCAAAGCGTTTCCACATAATTTGTGGAATTGCTCGAGGGCTTATGTATCTTCATCAAGATTCTCGACTGAGGATTGTCCATAGAGATCTCAAAGCAAGTAATGTTTTACTAGATGATACTTTGAATCCAAAAATATCAGATTTTGGAATGGCTAGAATTTTTGGAGGAGAGCAAATTGAAGGAAACACAGATAAAATAGTTGGGACATATGGGTATATGGCACCAGAGTATGCTGTTGATGGGCAATTTTCAGTAAAATCTGATGTTTTCAGTTTTGGAATTTTACTATTGGAGATTATATGTGGGAAGAAAAATAGAGGACATTATCGTACAAAGCAAACCTATAACCTTGTCAATTATGTATGGACGTTTTGGAAAATAGGCAGTACTTTAAAAATAATTGACTCAAACATAGAGGATTCATGCATTGAATCTGAAGCATTACGTTGCATTCATGTTGGACTCTTGTGTGTGCAACAATACCCGGAGGATAGGCCTACCATGACTGATGTGATTTTAATGTTAAGGAGTGAGATGAAATTGGATGAACCTAAAGAGCCAGGTTATTTTACGAAGAAGGATTCTATTGAAGCAACTTCAACCTCAAGTGGGAAGGATTCAAGTTCAAATAATGAAATGACAATAACCTTAAGTGTACGTTGA	1992	0.3865	MLPGMKVGWDLKRNLNRRLRAWKSDDDPTPGDLTWGFVLHPYPEIYMMNGETKHHRLGPWNGLRFSGMPELKPNSLFNYNYVSDEEEVSYTWSLKDNSLISKVILNQSTHERPRYVWSKIDKSWNLHSTMPADICDNYGRCGPNGYCCITNSPMCDCLRGFKPKSPEAWKSMDWSQGCVRNPPLNCKDDGFLPVDGLKLPDTSNTSVVETMNLLQCKAKCLNNCTCMAYTHSNISGEGSGCVMWFGDLIDIKKFPDGGQILYIRMPASELVTNNTGDGNKWNSRIFFVTAASVASGMFLLAIYFIIRFQRSNVTGKIFSENSNERHVDHLDLPLFDFQTIIIATDNFSEKNKIGEGGFGPVYWGKLADGLEIAVKRLSQSSGQGMSEFINEVKLIANLQHRNLVKLLGCCLQRHEKMLIYEYMVNGSLDYFIFDHTKGKVLDWPKRFHIICGIARGLMYLHQDSRLRIVHRDLKASNVLLDDTLNPKISDFGMARIFGGEQIEGNTDKIVGTYGYMAPEYAVDGQFSVKSDVFSFGILLLEIICGKKNRGHYRTKQTYNLVNYVWTFWKIGSTLKIIDSNIEDSCIESEALRCIHVGLLCVQQYPEDRPTMTDVILMLRSEMKLDEPKEPGYFTKKDSIEATSTSSGKDSSSNNEMTITLSVR.	664

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g04630	663	Gene3D	Phosphorylase Kinase; domain 1	309	422	-	-
	Seca4g04630	663	CDD	PAN_AP_plant	182	266	-	-
	Seca4g04630	663	ProSiteProfiles	PAN/Apple domain profile.	186	267	IPR003609	-
	Seca4g04630	663	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	423	626	-	-
	Seca4g04630	663	Gene3D	Transferase(Phosphotransferase) domain 1	423	637	-	-
	Seca4g04630	663	Pfam	Domain of unknown function (DUF3403)	621	660	IPR021820	GO:0004674
	Seca4g04630	663	MobiDBLite	consensus disorder prediction	628	663	-	-
	Seca4g04630	663	Pfam	Protein tyrosine and serine/threonine kinase	350	615	IPR001245	GO:0004672\|GO:0006468
	Seca4g04630	663	SUPERFAMILY	Protein kinase-like (PK-like)	332	633	IPR011009	-
	Seca4g04630	663	ProSiteProfiles	Protein kinase domain profile.	347	624	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g04630	663	Pfam	S-locus glycoprotein domain	56	165	IPR000858	GO:0048544
	Seca4g04630	663	SMART	ntp_6	186	265	IPR003609	-
	Seca4g04630	663	Pfam	PAN-like domain	186	251	IPR003609	-
	Seca4g04630	663	FunFam	receptor-like serine/threonine-protein kinase SD1-8	319	422	-	-
	Seca4g04630	663	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	2	645	-	-
	Seca4g04630	663	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	468	480	IPR008271	GO:0004672\|GO:0006468
	Seca4g04630	663	MobiDBLite	consensus disorder prediction	637	663	-	-
	Seca4g04630	663	SMART	serkin_6	347	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca4g04630	663	CDD	STKc_IRAK	353	618	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g04630	Seca-Chr4	85654785	85659283	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g04630	285	649	Receptor kinase-like Gene Family	AT4G23190	50.949	2.61e-126	384

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Seca4g04630		PK_Tyr_Ser-Thr	6.9e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g04630	-		-	gmx:100808807	960.288