Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04628 ATGGCCATTCTTTTTTTAATGATTATAATTGCTTACACGCTTTTTCCCTCTATAGCAATTAATTCAGTTAGTGTGTCTCTATCTCTAAGTGATGGCAAAACCTTAGTGTCCAAAGGTGGACATTTTGAACTCGGTTTCTTCAGTCCAGGAAATTCCCATAAACGCTACCTTGGAATTTGGTACAAGAATATCCCAATTCAAACAGTTGTTTGGGTTGCCAACAGAGACAAACCCATCAACAATACATCCGGCATCTTAACAATGAACAGCACAGGAAATCTTGTGCTGAGCCAGAATGATTCTGATTCTAGCACTGTTGTTTGGTACACAACCTCTCAAAAACAAGCACAGTATCCAGTGGCAGAGCTTTTGGACAGTGGCAATCTAGTGATAAGAAATGAGGGAGAAGCTGACAAAGAAGCTTACTTGTGGCAAAGCTTTGACTATCCATGTGATACTTTTTTGCCTGAGATGAAGTTGGGATGGGACCTCAAGAATGGTCTAGAAAGAAGATTAACATCTTGGAAGAGTCCAAATGATCCATCTCCAGGAGAATTTTACAGGGGTTTAGTTCTCAATAATTACCCTGAGTTTTATCTCATGAATGGAACAGAGAAGTTCTTCCGGTTTGGACCATGGAATGGCCTCTATTTTAGTGGCACTCCATCTGTAGGGACTAACCCCTTTTATGATACACAATATGTAAGCAAAAACAATTACATGTTTGTGTCCAATAAGGATGAGTTGTTCTACATGTATAGCCTCAAGAATAATTCTATACCCATCAGATCAGTAATAAATCAAACCAGTTATACATATGAGGGCTTTTTATGGGACGAAGATACTCAAGCTTGGGAGAGTTTTGGACCATACCCTGGTGACATATGTGACAAATATGGCCACTGTGGACCTAATGGGATTTGTAGAATTTCAGAATCTAAAGTCTGCCAATGCTTAGAAGGATTCAGTTGGAAGGACTCACAGGATTGGACTCGAGGATGTGTCCGCAACAAACCGTTAACATGCAAAGACAAGCACAATGATTGGTTTGTGAAGTTATTGAACTTTAAAGTTCCAGATACTTCACATACTTGGGTAGATGAGAATATGAATCTAGAGGAATGCAAAGAGAAGTGCTTGAATAATTGCTCTTGTACTGCTTATGCTAATTCAGACATTAAAGGAACAGGTAATGGCTGTGTCTTGTGGTTTGGTGATCTAATTGACATCAAACAGTTTGAAGTTGGTGGACAAGATCTATATATTAGGATGCCTGCTTTAGAGAAAGATGGAGAGCTTCAAAATGGCCACATTAGCAGTGGAGATGTAAAGCCTCATAATGGCCGCAAGAGGAACACAGCAACAATAGTTGTTACCACCATTGCTTCATTTTGTGGGATACTTTTGCTTTCTATTTACATTATCTATAAAGTCCGTAGAAACATTGCTGAGAAGTCAAAGAAAGAAGATGATGATGATGACAGATGTGTAGATAAATTGGATCTCCCCTTGTTTGATCTGCAAACCATTCAAACTGCCACTAACAACTTTCTGATAAATAATAAGATTGGTAAAGGTGGTTTTGGACCAACTGTATATTGGGGAAAATTACCAGATGGACAAGAAATTGCTGTCAAGAGACTTTCAAGGAGCTCAAAACAAGGAATGACCGAGTTCATAAATGAAGTAAAATTAATTGCAAAACTTCAACACCGAAATCTGGTAAAGCTTCTTGGCTGTTGCATTCAAGGATATGAAAAATTGCTAGTTTATAAGTACATGGCTAATGGCAGCTTAGACTCTTTCATCTTTGATCATAGCAAAGGTAAATTGCTACAATGGCCTCATCACTTCAACATAATACTTGGAATTGCTCGAGGACTTCTGTATCTTCACCAAGATTCTCGATTGAGGATTATCCATAGAGATCTCAAATCAAGTAATGTTTTACTTGATGACAAATTAAATCCTAAGATATCAGATTTTGGAATGGCAAGAGCTTTTGGAGGAGACCAGACCGAAGGAAACACAGAGAGAGTAGCGTGGACACTTTGGAAAGAGGACAAGGCTTTAGAATTGATTGACTCAAACATAAAGGAATCATGCACTAACTCAGAATGCCACAAAAGTTGTCATTCAATGGACCTTCTCTGTTTAATGATTATGGTTGCTTGCATATTTGTTCCTTCCATAGCAATTGATTCCATTAGTGTGTCGCAGTTTCTAAGTGATGGCGAGACCTTAGTTTCAAAAGGTGGAATATTTGAATTTGGTTTCTTCAGCCCAGGTAAGTCCAATAAACGTTACCTTGGGATTTGGTACACGAATACCGCAAGTAAAAAAGTTGTTTTGGTTATTAACAGGGACAATCCCATCGATAATCCCTTGGGCATATTAACAATGAAAAGCACAGGCGATCTTGAGCTCAGCCAAAACGACTCTATTGTTTGGCGTACAGCCTTAGGAAAACAAGTACAGAATCCAGTTGCAGAGCTCTTGGACAATGGAAATCTTGTGATAAGAAATGAGGGAGAAGAAGGCTACTTGTGGCAAAGCTTTGATTATCCAAGTGATACAATTTTGCCAGGGTTGAAGTTGGGATGGGACCTCCGAAATGGTCAGGAGCGGAGGATAACATCTTGGAAGAGTACCGGTGATCCATCACTAGGAGATATTTCTTGGGGTCTAGTGCTCAATAATTATCCTGAGTTTTATATAATGAAAGGAACAGAAAAGTACTCCCGGACTGGACCATGGAATGGGGTTTATTTTAGTGGCTTACCACATTATGGAAACCCAAATCCAATTTATGATTTCCATTACGGCTCAAACAAGGATGAGTTGTTCTACACGTTTACCCTCAAGAATACTTCTGTTTTCGTGACTGTCAATATAAGCCAATTTTGGTTTCAAACCTTTGTATACATACCGGATGGGAATAATTCAGATTGGATGCTTTATGCATCAAGCCCGCGGGATGAGTGTGATATATATGGGATCTGTGGACCCTATACCAAATGCATAGTCACAGAAAACCCATTTTGCCAATGTTTACAAGGGTTCAGTCCAAAGTCACCACAAGGATGGAACTCATCCGACTGGTCTCAAGGATGTGTCCGTAATAAACCATTAAGCTGCGAAGTGGATGATTTTGTCAAGTTTGTAGGCCTCAAAGTACCAGCTACGACACATACTTTGCTGGATGAGAATATTAATTTAGAGGCATGCAGGGTCATGTGCTTGAGTAATTGCTCTTGTACAGCCTACGCTAATTCAGACATAAGAGGAGCAGGCAGTGGCTGTGTCATGTGGTTTGAAGAACTAATTGACATAAGACAATTTGATGATGGTGGGCAAGATCTTTATATTCGTATGTCTGGCTCAGAGTTAGAAGATGCTCAACATGCGCACAACAATAGTGTGACAACAATAATTGCTACCACTACTGCTGCAATTTCTGGGTTGCTTTTGTTTTGCATTTATGCCATATACAGAATCCGAAGGAAAATTGCTGATTTGTCAGAAAATTCAAAGACAACAGAAGACATTGAAAGGCATCTAGATGAGCTGGATCTGCCATTGTTTGATCTGTCAACACTTACTATTGCAACTAACAGCTTCTCGTTGAATAATAAGATTGGACAAGGTGGTTTTGGATCTGTATATAAGGGTAAATTATTGGATGGGAGAGATATTGCTGTTAAGAGACTTTCAAGTAGCTCCGGACAAGGAATTACTGAGTTCATAACAGAAGTAAAACTAATTGCAAAACTTCAACATCGAAATCTTGTAAAGCTTCATGGTTGTTGTATTAGAGGACAAGAAAAATTGCTAATATATGAATATATGGCTAATGGTAGCCTTGACTCCTTCATTTTTGACCAAATAAAAGGTGAATTGCTAGAATGGCCACAACGCTTCCACATAATATTTGGAGTTGCTAGGGGGCTTATGTATCTTCATCAAGATTCCCGATTAAGGATTATTCATAGAGATCTTAAAGCAAGTAATGTTTTATTGGATGACAAGTTAAATCCAAAAAATCAGATTTTGGAATGGCAAGATCTTTTGGAGGAGACCAGATCGAAGGAAACACAAATAGAATAG 4107 0.3881 MAILFLMIIIAYTLFPSIAINSVSVSLSLSDGKTLVSKGGHFELGFFSPGNSHKRYLGIWYKNIPIQTVVWVANRDKPINNTSGILTMNSTGNLVLSQNDSDSSTVVWYTTSQKQAQYPVAELLDSGNLVIRNEGEADKEAYLWQSFDYPCDTFLPEMKLGWDLKNGLERRLTSWKSPNDPSPGEFYRGLVLNNYPEFYLMNGTEKFFRFGPWNGLYFSGTPSVGTNPFYDTQYVSKNNYMFVSNKDELFYMYSLKNNSIPIRSVINQTSYTYEGFLWDEDTQAWESFGPYPGDICDKYGHCGPNGICRISESKVCQCLEGFSWKDSQDWTRGCVRNKPLTCKDKHNDWFVKLLNFKVPDTSHTWVDENMNLEECKEKCLNNCSCTAYANSDIKGTGNGCVLWFGDLIDIKQFEVGGQDLYIRMPALEKDGELQNGHISSGDVKPHNGRKRNTATIVVTTIASFCGILLLSIYIIYKVRRNIAEKSKKEDDDDDRCVDKLDLPLFDLQTIQTATNNFLINNKIGKGGFGPTVYWGKLPDGQEIAVKRLSRSSKQGMTEFINEVKLIAKLQHRNLVKLLGCCIQGYEKLLVYKYMANGSLDSFIFDHSKGKLLQWPHHFNIILGIARGLLYLHQDSRLRIIHRDLKSSNVLLDDKLNPKISDFGMARAFGGDQTEGNTERVAWTLWKEDKALELIDSNIKESCTNSECHKSCHSMDLLCLMIMVACIFVPSIAIDSISVSQFLSDGETLVSKGGIFEFGFFSPGKSNKRYLGIWYTNTASKKVVLVINRDNPIDNPLGILTMKSTGDLELSQNDSIVWRTALGKQVQNPVAELLDNGNLVIRNEGEEGYLWQSFDYPSDTILPGLKLGWDLRNGQERRITSWKSTGDPSLGDISWGLVLNNYPEFYIMKGTEKYSRTGPWNGVYFSGLPHYGNPNPIYDFHYGSNKDELFYTFTLKNTSVFVTVNISQFWFQTFVYIPDGNNSDWMLYASSPRDECDIYGICGPYTKCIVTENPFCQCLQGFSPKSPQGWNSSDWSQGCVRNKPLSCEVDDFVKFVGLKVPATTHTLLDENINLEACRVMCLSNCSCTAYANSDIRGAGSGCVMWFEELIDIRQFDDGGQDLYIRMSGSELEDAQHAHNNSVTTIIATTTAAISGLLLFCIYAIYRIRRKIADLSENSKTTEDIERHLDELDLPLFDLSTLTIATNSFSLNNKIGQGGFGSVYKGKLLDGRDIAVKRLSSSSGQGITEFITEVKLIAKLQHRNLVKLHGCCIRGQEKLLIYEYMANGSLDSFIFDQIKGELLEWPQRFHIIFGVARGLMYLHQDSRLRIIHRDLKASNVLLDDKLNPKNQILEWQDLLEETRSKETQIE. 1369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04628 1368 Pfam Protein tyrosine and serine/threonine kinase 1208 1343 IPR001245 GO:0004672|GO:0006468
Seca4g04628 1368 Pfam Protein tyrosine and serine/threonine kinase 519 677 IPR001245 GO:0004672|GO:0006468
Seca4g04628 1368 ProSiteProfiles Protein kinase domain profile. 517 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04628 1368 CDD PAN_AP_plant 339 425 - -
Seca4g04628 1368 Gene3D Transferase(Phosphotransferase) domain 1 594 684 - -
Seca4g04628 1368 Gene3D Transferase(Phosphotransferase) domain 1 1283 1356 - -
Seca4g04628 1368 CDD B_lectin 739 856 IPR001480 -
Seca4g04628 1368 ProSiteProfiles PAN/Apple domain profile. 342 426 IPR003609 -
Seca4g04628 1368 ProSitePatterns Protein kinases ATP-binding region signature. 1213 1235 IPR017441 GO:0005524
Seca4g04628 1368 ProSiteProfiles PAN/Apple domain profile. 1046 1126 IPR003609 -
Seca4g04628 1368 CDD PAN_AP_plant 1043 1124 - -
Seca4g04628 1368 Pfam PAN-like domain 342 410 IPR003609 -
Seca4g04628 1368 Pfam PAN-like domain 1046 1111 IPR003609 -
Seca4g04628 1368 SUPERFAMILY alpha-D-mannose-specific plant lectins 782 887 IPR036426 -
Seca4g04628 1368 Gene3D Phosphorylase Kinase; domain 1 1168 1282 - -
Seca4g04628 1368 Gene3D Phosphorylase Kinase; domain 1 477 593 - -
Seca4g04628 1368 Gene3D - 730 853 IPR036426 -
Seca4g04628 1368 Gene3D - 19 147 IPR036426 -
Seca4g04628 1368 SMART serkin_6 517 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04628 1368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1328 1340 IPR008271 GO:0004672|GO:0006468
Seca4g04628 1368 ProSiteProfiles EGF-like domain profile. 991 1027 IPR000742 -
Seca4g04628 1368 CDD B_lectin 31 150 IPR001480 -
Seca4g04628 1368 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 729 853 - -
Seca4g04628 1368 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 6 677 - -
Seca4g04628 1368 SUPERFAMILY Protein kinase-like (PK-like) 501 682 IPR011009 -
Seca4g04628 1368 Pfam D-mannose binding lectin 782 882 IPR001480 -
Seca4g04628 1368 Pfam D-mannose binding lectin 68 176 IPR001480 -
Seca4g04628 1368 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1171 1282 - -
Seca4g04628 1368 SMART ntp_6 345 424 IPR003609 -
Seca4g04628 1368 SMART ntp_6 1046 1125 IPR003609 -
Seca4g04628 1368 FunFam receptor-like serine/threonine-protein kinase SD1-8 487 593 - -
Seca4g04628 1368 ProSiteProfiles Bulb-type lectin domain profile. 20 144 IPR001480 -
Seca4g04628 1368 ProSiteProfiles Protein kinase domain profile. 1207 1368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04628 1368 SUPERFAMILY Protein kinase-like (PK-like) 1186 1347 IPR011009 -
Seca4g04628 1368 ProSiteProfiles EGF-like domain profile. 292 328 IPR000742 -
Seca4g04628 1368 ProSiteProfiles Bulb-type lectin domain profile. 733 853 IPR001480 -
Seca4g04628 1368 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 594 685 - -
Seca4g04628 1368 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 181 IPR036426 -
Seca4g04628 1368 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 17 147 - -
Seca4g04628 1368 SMART blect_4 739 856 IPR001480 -
Seca4g04628 1368 SMART blect_4 26 150 IPR001480 -
Seca4g04628 1368 Pfam S-locus glycoprotein domain 208 324 IPR000858 GO:0048544
Seca4g04628 1368 Pfam S-locus glycoprotein domain 915 1025 IPR000858 GO:0048544
Seca4g04628 1368 FunFam Os07g0541700 protein 1283 1368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04628 Seca-Chr4 85571634 85585362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04628 452 683 Receptor kinase-like Gene Family AT4G23190 50.000 2.48e-67 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g04628 PK_Tyr_Ser-Thr 5.7e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04628 - - gmx:100812007 847.04