Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04626 ATGAAAGTCATTATGCTGAGGAAATTAGCTGATGGGCAAGAAATTGCTGTTAAGAGACTTTCAAGTAGTTTAGGACAAGGAATTTCTGAGTTCTTAACAGAAGTCAAACTAATTGCAAAACTTCAACACAGAAACCTTGTAAAGCTTCTTGGTTGTTGTATTCGAGGAAAAGAAAAATTGCTAGTATATGAATTTATGGCTAATGGTAGCCTTGACTCCTTTATTTTTGGCATGGACACTTTGGAAGTATTGCGATGCATCCATGTTAGTCTCTTATGCGTGCAGCAATATCCGGAGGATAGGCCAACCATGACCTCAGTAGTTCAAATGTTAGGTAGTGAGATGGAACTGGTTGACCCTAAAGAGCCCGGTTTCTTCCCAAGGAAAGTTTCTGATGGAGAAAATTCAAGCTCAAATCAAAATGAAATAAGTACAAATGATGAATAA 447 0.3758 MKVIMLRKLADGQEIAVKRLSSSLGQGISEFLTEVKLIAKLQHRNLVKLLGCCIRGKEKLLVYEFMANGSLDSFIFGMDTLEVLRCIHVSLLCVQQYPEDRPTMTSVVQMLGSEMELVDPKEPGFFPRKVSDGENSSSNQNEISTNDE. 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04626 148 MobiDBLite consensus disorder prediction 131 148 - -
Seca4g04626 148 SMART tyrkin_6 3 143 IPR020635 GO:0004713|GO:0006468
Seca4g04626 148 MobiDBLite consensus disorder prediction 119 148 - -
Seca4g04626 148 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 82 136 - -
Seca4g04626 148 FunFam Uncharacterized protein 2 65 - -
Seca4g04626 148 Pfam Protein tyrosine and serine/threonine kinase 11 76 IPR001245 GO:0004672|GO:0006468
Seca4g04626 148 ProSiteProfiles Protein kinase domain profile. 1 148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04626 148 SUPERFAMILY Protein kinase-like (PK-like) 3 80 IPR011009 -
Seca4g04626 148 Gene3D Phosphorylase Kinase; domain 1 2 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04626 Seca-Chr4 85504884 85506010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04626 9 77 Receptor kinase-like Gene Family AT4G21400 68.116 1.17e-25 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g04626 PK_Tyr_Ser-Thr 9.2e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04626 - - gmx:100807748 123.25