Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04625 ATGTCGCGTTCAGTCAAAACGGCCTCCACTGCCCTCCTTCGCTGGCGCCGGAAATGGCATCGTCATGAACGCCCCCTGCCAATTAAGGTTGTTCTGCCACAGGTGTATGCTTTAGGAACAGCCTTTGTTGCCACAAAGAATGGAGATGGGGTCCAATTCCTTTTGCCTCAAAGAATGGAGATGAGGTATTATGCATGGTATCTTCATGTATACAATTTTGATAAATGGACTGGTTTTTCAGATGCAGGAATGCTAGATCCATGTGGTTATTCTACAGACTTTGTAACACATTTTGATATCTGTATGATCCGAATAACAGAGTATCAAAATACAATGGACATTCCAACGTTCTTTGTTACAGTTACCTATATTTTTGTTCCCTTCTTCAAAGTTTGCATAGCAGTCGACTCAATTCGCTTGTTACAGTCCATTAGCTATGGCCAGCAGACACTAGAGTCCCAAAATGGAAGGTTTGAAATCGGTTTCTTCACTCCCGGTAACTCTAACAAAACTTACCTGGGTATTTGGTACAAGAACATCACAATTCAGAGAGTGGTTTGGGTCGCAAACAGAGTCAACCCCCTCAATGGTTCAAACGGCATCTTAACAGTTAACAGTACAGGCAGCCTCGTCCTCAGCCAAAACGGCACCGTTGTTTGGTACACAACCTCTCAAAAAACAGCACAGAATCCAGTGGTAGTGCTCTTGGACAACGGCAATCTTGTGGTAAGAAATGAAGAAGAAGCAAACCCTGAAGACTATTTGTGGCAGAGCTTTGACTATCCATCAGATACACTGTTGCCAGGGATGAAGTTAGGAAGGAACCTCAGAAACAGTCAAGATTGGAAATTAACATCTTGGAATAGTCCAGTAGATCCATCCCCAGGAGTTATTTCTTTGGGTGTAGTACTTCATGCTTATCCTGAATATGTTATGATGAAAGGAACAGAGAAGTTTTACCGTCAAGGACCATATAATGGCCTACATCTTAGTGGAGTACCAGCACAACAACCCATCGACTCCTTTTTGAATTCCGAGATTGTCAAGAACAAGGATGAGATCTACTACGCATATAGCCTCAAGAACAATTCTGTCATCTCATATATGGTATTAAACCAAACCACTCTTGTTCAGTATGTGTGGCATGAAGAATATCATGATTGGAAGACTTATTATTCAGTCCCCAGAGACAATTGTGACAAGTATGGCCTTTGTGGAGCCTATGGAAATTGCATGATTTCTCAAGGACAGGTCTGCCAATGTTTGAATGGGTTCAGTCCAAAGTCACCACAAGCATGGATCACATCGGACTGGAGTCAAGGATGTGTCCGTGATGAACCGTTAAGCAGCTGCAATGACACACACAAGGATGGGTTTGTCAAATTTGAAGGCCTCAAAGTTCCAGATACAACACATACCTGGTTAGATGAAAGTTTGGGTCTAGAGGAATGCAGAGACAAGTGCTTGAATAATTGCTCTTGTATGGCTTATGCAAATTCAAACATCAGTGGAGCAGGTAGTGGCTGTGTCATGTGGTTCGGCGATCTAATTGACATGAGACAATTTGAAGATGGTGGTCAAGTTCTTTATATCCGTATGGTAGCTGGTCCAGAATTAGTCAACCATGAACACCCTGCAGATAGCCACGACAAAAGGGTGACAAAAATAATTGCTACTACCGTTGCTGCAATTTCTGGGGTGCTTATATTTTGCATTTATATCATATACAGAGTCCAAAGAAAAATTGCAGATAACAACATTGAAATACATCTAGATGAACTGGATTTGCCATTATTCGATCTGCTAACAATTACTACTGCCACTCACAACTTCTCGTTGAATAATAAAATTGGACAAGGTGGTTTTGGACCTGTATACAAGGGGAAATTAGCGGATGGGCAAGAAATTGCTGTTAAGAGACTTTCAAGTAGTTCCGGACAAGGAATTTCTGAGTTCTTTACAGAAGTCAAACTAATTGCAAAACTTCAACACAGAAATCTTGTAAAGCTTCTTGGTTGTTGTATTCGAGGAGAAGAAAAATTGCTAGTATATGAATTTATGGCTAATGGTAGCCTTGACTCCTTTATTTTTGATCAAATAAAAGGTAAATTATTGGAGTGGCCCCAACGCTTCAACATAATATTTGGAATTGCAAGAGGGCTTTTGTATCTTCATCAAGATTCTCGATTAAGAATCATTCATAGAGATCTCAAAGCAAGTAATGTTTTACTCGATGATAAGTTAAATCCAAAAATATCAGATTTTGGAATGGCTAGATCTTGTGGAGGAGACCAAATTGAAGGAAACACAAATAAAATTGTTGGGACTTATGGATACATGGCACCAGAGTATGCTGTTGATGGGCTATTTTCAATAAAATCTGATGTTTTCAGCTTTGGTATTTTATTGTTGGAGATTATATGTGGGAACAAAAATAGAGCTCTTTGTCATAGAAACCAGACTCTTAACCTTGTTGGTTATGCATGGACACTTTGGAAGGAGGGAAACGCTTTACAGTTGATTGACTCAAGAATAAAGAACTCATGTGTTGTCTCAGAGGTATTGCAATGCATCCATGTTAGTCTCTTATGCGTGCAGCAATATCCGGAGGATAGACCAACCATGACCTCAGTAGTACAAATGTTAGGTAGTGAAAATGAACTAATTGAGCCCAAAGAGCCTGGGTTCTTCCCAAGGAGTATTTCTAATGGAGGAAATCCAAGCTCAAATCAAAATGAAATGAGTACAAATGATGAATTAACCATTACCTCATTAAATGGCCGATGA 2787 0.4008 MSRSVKTASTALLRWRRKWHRHERPLPIKVVLPQVYALGTAFVATKNGDGVQFLLPQRMEMRYYAWYLHVYNFDKWTGFSDAGMLDPCGYSTDFVTHFDICMIRITEYQNTMDIPTFFVTVTYIFVPFFKVCIAVDSIRLLQSISYGQQTLESQNGRFEIGFFTPGNSNKTYLGIWYKNITIQRVVWVANRVNPLNGSNGILTVNSTGSLVLSQNGTVVWYTTSQKTAQNPVVVLLDNGNLVVRNEEEANPEDYLWQSFDYPSDTLLPGMKLGRNLRNSQDWKLTSWNSPVDPSPGVISLGVVLHAYPEYVMMKGTEKFYRQGPYNGLHLSGVPAQQPIDSFLNSEIVKNKDEIYYAYSLKNNSVISYMVLNQTTLVQYVWHEEYHDWKTYYSVPRDNCDKYGLCGAYGNCMISQGQVCQCLNGFSPKSPQAWITSDWSQGCVRDEPLSSCNDTHKDGFVKFEGLKVPDTTHTWLDESLGLEECRDKCLNNCSCMAYANSNISGAGSGCVMWFGDLIDMRQFEDGGQVLYIRMVAGPELVNHEHPADSHDKRVTKIIATTVAAISGVLIFCIYIIYRVQRKIADNNIEIHLDELDLPLFDLLTITTATHNFSLNNKIGQGGFGPVYKGKLADGQEIAVKRLSSSSGQGISEFFTEVKLIAKLQHRNLVKLLGCCIRGEEKLLVYEFMANGSLDSFIFDQIKGKLLEWPQRFNIIFGIARGLLYLHQDSRLRIIHRDLKASNVLLDDKLNPKISDFGMARSCGGDQIEGNTNKIVGTYGYMAPEYAVDGLFSIKSDVFSFGILLLEIICGNKNRALCHRNQTLNLVGYAWTLWKEGNALQLIDSRIKNSCVVSEVLQCIHVSLLCVQQYPEDRPTMTSVVQMLGSENELIEPKEPGFFPRSISNGGNPSSNQNEMSTNDELTITSLNGR. 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04625 928 ProSiteProfiles Bulb-type lectin domain profile. 135 256 IPR001480 -
Seca4g04625 928 MobiDBLite consensus disorder prediction 901 928 - -
Seca4g04625 928 Gene3D Transferase(Phosphotransferase) domain 1 687 892 - -
Seca4g04625 928 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 122 873 - -
Seca4g04625 928 SMART ntp_6 454 533 IPR003609 -
Seca4g04625 928 Gene3D Phosphorylase Kinase; domain 1 575 686 - -
Seca4g04625 928 SUPERFAMILY Protein kinase-like (PK-like) 593 882 IPR011009 -
Seca4g04625 928 Gene3D - 131 259 IPR036426 -
Seca4g04625 928 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 687 890 - -
Seca4g04625 928 ProSiteProfiles Protein kinase domain profile. 611 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04625 928 ProSitePatterns Serine/Threonine protein kinases active-site signature. 732 744 IPR008271 GO:0004672|GO:0006468
Seca4g04625 928 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 131 259 - -
Seca4g04625 928 SMART serkin_6 611 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04625 928 Pfam S-locus glycoprotein domain 320 429 IPR000858 GO:0048544
Seca4g04625 928 PIRSF SRK 108 928 IPR024171 GO:0004674
Seca4g04625 928 MobiDBLite consensus disorder prediction 899 928 - -
Seca4g04625 928 Coils Coil 928 928 - -
Seca4g04625 928 Pfam D-mannose binding lectin 185 287 IPR001480 -
Seca4g04625 928 SMART blect_4 142 262 IPR001480 -
Seca4g04625 928 Pfam Protein tyrosine and serine/threonine kinase 612 882 IPR001245 GO:0004672|GO:0006468
Seca4g04625 928 Pfam PAN-like domain 451 519 IPR003609 -
Seca4g04625 928 CDD STKc_IRAK 617 882 - -
Seca4g04625 928 CDD PAN_AP_plant 449 532 - -
Seca4g04625 928 SUPERFAMILY alpha-D-mannose-specific plant lectins 185 293 IPR036426 -
Seca4g04625 928 FunFam receptor-like serine/threonine-protein kinase SD1-8 583 686 - -
Seca4g04625 928 ProSiteProfiles PAN/Apple domain profile. 451 535 IPR003609 -
Seca4g04625 928 CDD B_lectin 144 262 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04625 Seca-Chr4 85492991 85502709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04625 541 900 Receptor kinase-like Gene Family AT4G23190 49.189 9.85e-118 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g04625 PK_Tyr_Ser-Thr 1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04625 - - gmx:100812007 1090.49