Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04623 ATGGACATTCTTACTTTCATGATTACAGTTACCTATATACTCCTTCCATCTCTCAAAGTTTCCCTAGCAACTGACTCTATCCGGTTGTCACAGTCCATCAGCCATGGCATGACGTTAGTGTCCCAAAGTGGAAGGTTTGAACTCGGTTTCTTCACTCCCGGTAACTCTAACAAAACTTACCTGGGTATTTGGTACAAGAATATCCCTGTTGAGAGAGTTGTTTGGGTTGCAAACAGAGTCAGCCCCATCAATGGTTCAAACCCAATCTTAACCGTTAACAGCACAGGCAGCCTCGTCCTCAGCCAAGACGGCACCGTTGTTTGGTATACAGCCTCTCAAAAGCAAGAACAGAATCCAGTGGCAGTGCTCTTGGACAGTGGCAATCTTGTGGTAAGAAATGAGGGAGAACCAAACCCTGAAGACTATCTGTGGCAGAGCTTTGACTATCCATCACATGCAATGTTGCCTGGCATGAAATCGGGAAGGAACCTAAGAACTGGTCAAAATTGGCATTTCACATCGTGGAGGAGTCCAGTAGATCCATCCCCTGGAGATGTTTCTGTGGGTTTAGTACTTCATGCTTATCCTGAATATGTTATAATGAAGGGAACACAGACGTTCTACCGCTTTGGACCATGGAATGGCCTATATTTTAGTGGAATACCAGTACAACAACCCACCAACTCCTTTTTTAATTTCGAGTATGTTTCCAACAAAGAGGAGATCTTCTTCGATTATAGCCTCAAAAACAATTCTGTCATCTCAGTAGTAGTACTAAACCAAACCACTCTTTATCGCTATGTATGGGACGAACAAGATCACGGTTGGAGGACTTATACATCAGTCCCCAAAGACTATTGTGACACATATGGCCTTTGTGGAGCCTATGGAAATTGCATAATTAGGGAGGCACAAGTGTGTCAATGTTTGAATGGGTTCAGTCCAAAGTCACCACAAGCATGGAGCATATCGGATTGGACTCAAGGTTGTGTCCGCGATGAACCGTTAAGTAGCTGCAACGACACACACAAGGATGGGTTTGTCAAATTTGAAGGCCTCAAAGTTCCAGATACAACACATACCTGGTTAGATGAAAGTATGGGTCTTGAGGAATGCAGAAACAAGTGCTTGAATAATTGCTCTTGTATGGCTTATGCAAATTCAAACATCAGTGGAGCAGGTAGTGGCTGTGTCATGTGGTTCGGCGATCTAATTGACATGAGACAATTTGAAGATGATGGGCAAGTTCTTTATATCCGTATGGCTGCTGAAGAGCCTGCACACGGGCACAACAAAAGGGTGACAGAAATAATTGCTACAACCGTTGCTGCAATTTCTGGGATGCTTATACTTTCCATTTATGTCATATACAGAGTCCGAAGGAAAATTGCAGATAAGTCAAAGATAGAAGATAACATTGAAGGACATCTAGATGAGCTAGATTTGCCATTATTCGATCTGCTAACAATTACTACTGCCACTCACAACTTCTTGTTGAATAATAAGATTGGACAAGGTGGTTTTGGATCTGTATATAAGAGAAAAACAACAAAAGAAGCAGTTTTGTTATACAAATCATATATTCAAATAATGCAGGGGAAATTAGCAGATGGACAAGAAATTGCTGTAAAGAGACTTTCAAGTAGTTCCAGACAAGGAATTTCTGAGTTCTTAACAGAAGTCAAACTAATAGCAAAACTTCAACACAGAAATCTTGTAAAGCTTCTTGGTTGCTGTATTCGAGGAGAAGAAAAATTGCTAGTATATGAATTTATGGCTAATGGTAGCCTTGACTCCTTTATTTTTGATCAAATAAAAGGTAAATTGCTGGAGTGGCCCCAACGCTTCCACATAATATTTGGAGTTGCTAGAGGGCTTTTGTATCTTCATCAAGATTCACGATTAAGAATCATTCATAGAGATCTCAAAGCAAGTAATGTTTTACTCGATGATAAGTTAAACCCAAAAATATCAGATTTTGGAATGGCCAGATCTTTTGGAGGAGACCAGATTGAAGGAAACACAAATAGAATAGTTAGGACTTATGGATACATGGCACCAGAGTATGCTGCTGATGGGTTATTTTCAATAAAATCTGATGTTTTCAGCTTTGGTATTTTATTGTTGGAGATTATATGTGGGAACAAAAATAGAACCCTTTGTCATAGAAACCAGACTCTTAACCTTGTTGGTTATGCATGGACACTTTGGAAGGAGGGAAACACTTTACAATTGATTGACTCAAGAATAAAGGATTCTTATGTTGTCTTAGAAGTATTGCGATGCATCCATGTTTGTCTCTTATGCGTGCAGCAATATCCAGAGGATAGACCAACCATGACCTCAGTAGTACAAATGTTAGGTAGTGAAAAGGAACTGGTTGACCCCAAAGAGCCTGGGTTCTTCCCAAGGAATGTTTCTGATGGAGGAATTTCAAGCTCAAATCAAAATGAAATGAGTACAAATGATGAATTAACCGTTACCTCCTTAAATGGCCGATGA 2502 0.4021 MDILTFMITVTYILLPSLKVSLATDSIRLSQSISHGMTLVSQSGRFELGFFTPGNSNKTYLGIWYKNIPVERVVWVANRVSPINGSNPILTVNSTGSLVLSQDGTVVWYTASQKQEQNPVAVLLDSGNLVVRNEGEPNPEDYLWQSFDYPSHAMLPGMKSGRNLRTGQNWHFTSWRSPVDPSPGDVSVGLVLHAYPEYVIMKGTQTFYRFGPWNGLYFSGIPVQQPTNSFFNFEYVSNKEEIFFDYSLKNNSVISVVVLNQTTLYRYVWDEQDHGWRTYTSVPKDYCDTYGLCGAYGNCIIREAQVCQCLNGFSPKSPQAWSISDWTQGCVRDEPLSSCNDTHKDGFVKFEGLKVPDTTHTWLDESMGLEECRNKCLNNCSCMAYANSNISGAGSGCVMWFGDLIDMRQFEDDGQVLYIRMAAEEPAHGHNKRVTEIIATTVAAISGMLILSIYVIYRVRRKIADKSKIEDNIEGHLDELDLPLFDLLTITTATHNFLLNNKIGQGGFGSVYKRKTTKEAVLLYKSYIQIMQGKLADGQEIAVKRLSSSSRQGISEFLTEVKLIAKLQHRNLVKLLGCCIRGEEKLLVYEFMANGSLDSFIFDQIKGKLLEWPQRFHIIFGVARGLLYLHQDSRLRIIHRDLKASNVLLDDKLNPKISDFGMARSFGGDQIEGNTNRIVRTYGYMAPEYAADGLFSIKSDVFSFGILLLEIICGNKNRTLCHRNQTLNLVGYAWTLWKEGNTLQLIDSRIKDSYVVLEVLRCIHVCLLCVQQYPEDRPTMTSVVQMLGSEKELVDPKEPGFFPRNVSDGGISSSNQNEMSTNDELTVTSLNGR. 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04623 833 Pfam PAN-like domain 339 407 IPR003609 -
Seca4g04623 833 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 592 795 - -
Seca4g04623 833 SMART ntp_6 342 421 IPR003609 -
Seca4g04623 833 ProSiteProfiles PAN/Apple domain profile. 339 423 IPR003609 -
Seca4g04623 833 CDD PAN_AP_plant 337 422 - -
Seca4g04623 833 SMART serkin_6 497 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04623 833 Gene3D Phosphorylase Kinase; domain 1 458 591 - -
Seca4g04623 833 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Seca4g04623 833 Gene3D Transferase(Phosphotransferase) domain 1 592 798 - -
Seca4g04623 833 FunFam Uncharacterized protein 525 591 - -
Seca4g04623 833 ProSiteProfiles Bulb-type lectin domain profile. 24 144 IPR001480 -
Seca4g04623 833 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 147 - -
Seca4g04623 833 CDD STKc_IRAK 503 787 - -
Seca4g04623 833 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 338 421 - -
Seca4g04623 833 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
Seca4g04623 833 MobiDBLite consensus disorder prediction 805 833 - -
Seca4g04623 833 Pfam Protein tyrosine and serine/threonine kinase 499 787 IPR001245 GO:0004672|GO:0006468
Seca4g04623 833 SUPERFAMILY Protein kinase-like (PK-like) 482 801 IPR011009 -
Seca4g04623 833 Pfam D-mannose binding lectin 73 176 IPR001480 -
Seca4g04623 833 SMART blect_4 30 150 IPR001480 -
Seca4g04623 833 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544
Seca4g04623 833 ProSiteProfiles Protein kinase domain profile. 497 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04623 833 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 778 - -
Seca4g04623 833 CDD B_lectin 30 150 IPR001480 -
Seca4g04623 833 PIRSF SRK 1 833 IPR024171 GO:0004674
Seca4g04623 833 ProSiteProfiles EGF-like domain profile. 283 319 IPR000742 -
Seca4g04623 833 MobiDBLite consensus disorder prediction 807 833 - -
Seca4g04623 833 Gene3D - 19 147 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04623 Seca-Chr4 85411547 85415598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04623 424 805 Receptor kinase-like Gene Family AT4G23190 47.949 9.68e-115 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g04623 PK_Tyr_Ser-Thr 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04623 - - gmx:100812007 1098.19