Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04618 ATGGACATTCTTACTTTCATGATTACAGTTACCTATATACTCCTTCCATCTCTCAAAGTTTCCTTAGCAACTGACTCTATCCGGTTGTTACAGTCCATCAGCCATGGGAAGACGTTAGTGTCCCCAAGTGGAAGGTTTGAACTTGGTTTCTTCACTCCCGGTAACTCTAATAAAACTTACCTGGGTATTTGGTACAAGAATATCCCTGTTGAGAGAGTTGTTTGGGTTGCAAACAGGGTCAGCCCCATCAATGGTTCAAACCCAATCTTAACAGTTAACAGCACAGGCAGCCTCGTCCTCAGCCAAAACGGCACCGTTGTTTGGTATACAGCCTCTCAAAAGCAAGCACAGAATCCAGTGGCAGTGCTCTTGGACAGTGGCAATTTTGTGGTAAGAAATGAGGGAGAACCAAACCCTGAAGGCTATTTGTGGCAGAGATTTGACTATCCATCAGATACACTGTTGCCAGGGATGAAGTTAGGAAGGAACCTCAGAAACAGTCTAGATTGGCAATTAACATCTTGGAATAGTCCAGTAGATCCATCCCAAGGAGTTATTTCTTTGGGTTTAGTACTTCATGCTTATCCTGAATATTATATGATGAAGGGAACAGACAAGTTCTACCGTCTTGGACCATATAATGGCCTACATCTTAGTGGAGTACCACAACAACAACCCACCACCTCCTTTTTGAATTCCGAGTTTGTCACGAACAAAGATGAGATCTTCTACACATATAGCCTCAAAAACAATTCTGTTATCTCATGTATAGTATTAAACCAAACCAATCTCGTTCACTATGTGTGGCATGAAGATTATCTTGATTGGAGGACTTATTATTCACTCCCCATAGACAATTGTGACAAGTATGGCCTTTGTGGAGCCTATGGAAATTGCATGATTTCCCAAGGACAGGTCTGCCAATGTTTGAATGGGTTCAGTCCAAAGTCACCACAAGCATGGATCACATCAGATTGGACTCAAGGATGTGTCCGTGATGAACCGTTAAGCAGCTGCAACGATACACACAAGGATGGGTTTGTCAAATTTGAAGGCCTTAAAGTTCCAGATACTACACATACTTGGTTAGATGAAACTATGGAACTAGAGGAATGCAGAGACAAGTGCTTGAATAATTGCTCTTGTATGGCTTATGCAAATTCAAACATCAGTGGAGCAGGTAGTGGCTGTGTCATGTGGTTCGGCGATCTAATTGACATGAGACAATTTGAATGTGGTGGGCAAGATCTTTATATCCGTATGGTAGCTGGTCCAGAACTAGTCAACCATAAACACCCTGCACATAGCCACGACAAAAGGGTGACAAAAATAACTGCTACTACCGTTGCTGCAATTTCTGGGCTGCTTATATTTTGCATTTATGTCATATACAGAGTCCGAAGGAAAATTGCAGATAAGTCCGAGATACAAGATAACATTGAAATACATCTAGATGAGCTTGATTTGCCATTATTCGATCTGCTAACAATTACTACCGCCACTCACAACTTCTCGTTGAATAATAAAATTGGACAAGGTGGTTTTGGACCTGTATATAAGGGGAAATTAGCGGATGGGCAAGAAATTGCTGTTAAGAGACTTTCAAGTAGTTCCGGACAAGGAATTTCTGAGTTCTTAACAGAAGTCAAACTAATTGCAAAACTTCAACACAGAAATCTTGTAAAGCTTCTTTGCTATTGTATTCGAGGAGAAGAAAAATTGCTAGTATATGAATTTATGGCTAATGGCAGCCTTGACTCCTTTATTTTTGATTTTGGAACGGCCAGATCTTGTGGAGGAGACCAGATTGAAGGAAACACAAATAGAATAGTTGGGACTTATGGATACATGGCACCAGAGTATGCTACTGATGGGCTCTTTTCAATAAAATCTGATGTTTTCAGCTTTGGTATTTTATTGTTGGAGATTATATGTGGGAACAAAAATAGAGCTCTTTGTCATAGAAATCAGACTCTTAACCTTGTTGGTTATGCATGGACACTTTGGAAGGAGGGAAACACTTTACAATTGATTGACTCAAGAATAAAGGACTCATGTGTTGTCTCAGAGGTATTGCGATGCATCCATGTTAGCCTCTTATGCGTGCAGCAATATCCGGAGGATAGACCAACCATGACCTCAGTAATACAAATGTTAAGTAGTGAAAAGGAACTGGTTGACCCCAAAGAACCTGGGTTCTTCCCAAGGAATGTTTCTGATGGAGGAAATTCAAGCTCAAATCAAAATGAAATTAGTACAAATGATGAATTAACCGTTACCTCATTAAATGGCCGATGA 2298 0.4051 MDILTFMITVTYILLPSLKVSLATDSIRLLQSISHGKTLVSPSGRFELGFFTPGNSNKTYLGIWYKNIPVERVVWVANRVSPINGSNPILTVNSTGSLVLSQNGTVVWYTASQKQAQNPVAVLLDSGNFVVRNEGEPNPEGYLWQRFDYPSDTLLPGMKLGRNLRNSLDWQLTSWNSPVDPSQGVISLGLVLHAYPEYYMMKGTDKFYRLGPYNGLHLSGVPQQQPTTSFLNSEFVTNKDEIFYTYSLKNNSVISCIVLNQTNLVHYVWHEDYLDWRTYYSLPIDNCDKYGLCGAYGNCMISQGQVCQCLNGFSPKSPQAWITSDWTQGCVRDEPLSSCNDTHKDGFVKFEGLKVPDTTHTWLDETMELEECRDKCLNNCSCMAYANSNISGAGSGCVMWFGDLIDMRQFECGGQDLYIRMVAGPELVNHKHPAHSHDKRVTKITATTVAAISGLLIFCIYVIYRVRRKIADKSEIQDNIEIHLDELDLPLFDLLTITTATHNFSLNNKIGQGGFGPVYKGKLADGQEIAVKRLSSSSGQGISEFLTEVKLIAKLQHRNLVKLLCYCIRGEEKLLVYEFMANGSLDSFIFDFGTARSCGGDQIEGNTNRIVGTYGYMAPEYATDGLFSIKSDVFSFGILLLEIICGNKNRALCHRNQTLNLVGYAWTLWKEGNTLQLIDSRIKDSCVVSEVLRCIHVSLLCVQQYPEDRPTMTSVIQMLSSEKELVDPKEPGFFPRNVSDGGNSSSNQNEISTNDELTVTSLNGR. 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04618 765 Pfam D-mannose binding lectin 73 175 IPR001480 -
Seca4g04618 765 Gene3D Transferase(Phosphotransferase) domain 1 575 730 - -
Seca4g04618 765 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 338 421 - -
Seca4g04618 765 ProSiteProfiles Bulb-type lectin domain profile. 24 144 IPR001480 -
Seca4g04618 765 SMART ntp_6 342 421 IPR003609 -
Seca4g04618 765 MobiDBLite consensus disorder prediction 727 765 - -
Seca4g04618 765 ProSiteProfiles PAN/Apple domain profile. 339 422 IPR003609 -
Seca4g04618 765 PIRSF SRK 1 591 IPR024171 GO:0004674
Seca4g04618 765 PIRSF SRK 589 765 IPR024171 GO:0004674
Seca4g04618 765 Pfam PAN-like domain 339 407 IPR003609 -
Seca4g04618 765 FunFam receptor-like serine/threonine-protein kinase SD1-8 475 579 - -
Seca4g04618 765 MobiDBLite consensus disorder prediction 738 765 - -
Seca4g04618 765 Pfam Protein tyrosine and serine/threonine kinase 505 589 IPR001245 GO:0004672|GO:0006468
Seca4g04618 765 CDD PAN_AP_plant 337 420 - -
Seca4g04618 765 Gene3D Phosphorylase Kinase; domain 1 465 574 - -
Seca4g04618 765 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 710 - -
Seca4g04618 765 SMART blect_4 30 150 IPR001480 -
Seca4g04618 765 Gene3D - 19 147 IPR036426 -
Seca4g04618 765 SUPERFAMILY Protein kinase-like (PK-like) 489 737 IPR011009 -
Seca4g04618 765 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 147 - -
Seca4g04618 765 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
Seca4g04618 765 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544
Seca4g04618 765 CDD B_lectin 31 150 IPR001480 -
Seca4g04618 765 ProSiteProfiles EGF-like domain profile. 283 319 IPR000742 -
Seca4g04618 765 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 600 724 - -
Seca4g04618 765 ProSiteProfiles Protein kinase domain profile. 504 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04618 Seca-Chr4 85326311 85329905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04618 492 761 Receptor kinase-like Gene Family AT3G45860 42.249 3.88e-69 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g04618 S_locus_glycop 1.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04618 - - gmx:100812007 982.63