Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04616 ATGATTACAGTTATCTATATATTTCTTCCCTCTTTCAAAGTTTCCATAGCAGCAGCAGGTGACTCTATTCGTTTGTCACAGTCCATCAACGATAGCCAGACCCTGGTGTACCAAAATGGATGGTTTGAACTCGGATTTTTCAGGCCCGGTAACCCTAACAAAACTTACCTGGCTATTTGGTACAGGAACATCCCTGTTGAGAGAGTTGCTTGGGTTGCAAACAGAGTCAACCCTATCAATGGTTCAAACGGCATCTTCACCGTTAACAGCACAGGCAGCCTTGTCCTAAGCCAAAACGGCACCGTTGTTTGGTACACAACCTCTCAAAAGCAAGCACATAATCCAGTTGCAGTGCTCTTGGATAGTGGCAATTTCGTGGTAAGAAATGAGGGAGAAACAAACCCTGAAGACTATTTGTGGCAGAGCTTTGACTATCCATCACATGCAATGTTGCCTGGCATGAAATTGGGATGGAACCTGAGAATTGGTCAAAATTGGGAATTAACATCTTGGAAAAGTCCAATAGATCCTTCCCCTGGTGATGTTTCTTTGGGTTTAGTACTTCATGCATATCCTGAGTATGTTATGATGAAGGGAACAGAGAAGTTCTACCGTCTTGGACCATGGAATGGCCTACATATTGGTGGATTACCAGAATTGCAATCTAACTCCTTTATGACTTACGAGCTTGTCACCAACAACGATGAGAATTTCTACACCTATACTCTCAATAACAATTCTGTCATCTCATATATAGTATTAAACCAAACCAATCTTGTTCACTATGTGTGGCATGAAGAATATCATGATTGGAGGATTTACATATCACTCCCGAAAGACTATTGTGACACATATGGCCTTTGTGGAGCATATGGAAATTGCAAAATTAACGAGGCACAAGTTTGTCAATGTTTGAATGGGTTCAGTCCAAAGTCACCACAAGCATGGATCACATCGGATTGGGCTCAAGGATGTGTCCGAAATGAACCGTTAAGGTGCAACGATACACACAAGGATGGGTTTGTCAAATTTGAAGGCCTCAAAGTTCCAGATACTACACGTACTTGGTTAGATGGAAGTATGGATCTAGAGGAATGCAGAGACAAGTGCTTGAATAATTGCTCTTGTATGGCTTATGCGAATTCAAACATAAGTGTAGCAGGTAGTGGCTGTGTCATGTGGTTTGAAGACCTAATTGACATAAGGCAATTTGATGATGGTGGGCAAGATCTTTATATTCGGATGTCTGGCTCAGAGTTAGATCAAATCAATCCTGAAGAGCGTGAAAATAGGCGTAAAAGGAAGAGAATGACCATAATTGCTATCACCATTGCTTCAATTTGCGGGGTGCTTTTACTATGTCTTTATTGTATCTGGAGAGTCAGAAGGAAGATTGTTGCCCATTTTAATTTCTTTTTCATGACTTTTTACCATTTTGTAGAGAGATCTGAACAGTATGTGGATGATTTAGATCTCCCATTATTTGATCTATCAATAATTTCAATTGCCACTAATGGCTTCTCAATGAATAAAAAGATTGGAGAAGGTGGTTTTGGTCCTGTATATAAGGGAAAATTAGCAGATGGTCAAGAAATTGCCGTCAAGAAACTTTCAAGCTTGTCGGGCCAAGGAATTACTGAGTTCATAAATGAAGTAAAACTAATTGCACAACTTCAACACCGTAATCTAGTAAAGCTTTTAGGTTGTTGCATACAAGGAGAAGAACGAATGTTGGTTTACGAATACATGGCCAATGGCAGCCTAGACTCTTTTATTTTCAATAATACAAAGGGTAAATTGTTAGAGTGGCCTCAACGGTTCAACATAATATGTGGAATTACTAGGGGTTTGATGTATCTTCACCAAGATTCAAGATTGAGGATTATCCATAGAGATCTCAAAGCAAGCAATGTTTTACTTGATGATAATTTAAATCCAAAAATATCATATTTTGGAACTGCTAGAATTTTTGGAGCAGATCAAACTGAAGGAAACACAAAAAGAATAATTGGGACATATGGATACATGGCACCTGAATATGCTGTTGATGGATTGTTTTCTATGAAATCTGACGTTTTTAGCTTCGGAATTTTATTGTTAGAGATTATATGTGGAAAACGAAATAAAGCATATTATCACATGGATGGCATTCTTAACCTTGTTGGCCAAGCTTGGACATTATGGAAAGAGGATAGGGCTTTAGAGTTGGTGGATTCAAACATAGGTAACACATATGTTGTATCAGAAGTGTTGCGTTGCATGCACGTTAGTCTCTTGTGTGTGCAACAAAACCCAAATGATAGGCCTACCATGACCTCTGTGATTTTAATGTTAGGGAGTGAGATGGAATTGGTGGAGCCTAAAGAACCTGGTTTCATTTCGAGAAATATTTCAACTGAACACACAAGTCAAAAGGATAGTAGTTCAGTAAATGATGTGACCATTTCTTTAATAGATGCTCGATGA 2466 0.3893 MITVIYIFLPSFKVSIAAAGDSIRLSQSINDSQTLVYQNGWFELGFFRPGNPNKTYLAIWYRNIPVERVAWVANRVNPINGSNGIFTVNSTGSLVLSQNGTVVWYTTSQKQAHNPVAVLLDSGNFVVRNEGETNPEDYLWQSFDYPSHAMLPGMKLGWNLRIGQNWELTSWKSPIDPSPGDVSLGLVLHAYPEYVMMKGTEKFYRLGPWNGLHIGGLPELQSNSFMTYELVTNNDENFYTYTLNNNSVISYIVLNQTNLVHYVWHEEYHDWRIYISLPKDYCDTYGLCGAYGNCKINEAQVCQCLNGFSPKSPQAWITSDWAQGCVRNEPLRCNDTHKDGFVKFEGLKVPDTTRTWLDGSMDLEECRDKCLNNCSCMAYANSNISVAGSGCVMWFEDLIDIRQFDDGGQDLYIRMSGSELDQINPEERENRRKRKRMTIIAITIASICGVLLLCLYCIWRVRRKIVAHFNFFFMTFYHFVERSEQYVDDLDLPLFDLSIISIATNGFSMNKKIGEGGFGPVYKGKLADGQEIAVKKLSSLSGQGITEFINEVKLIAQLQHRNLVKLLGCCIQGEERMLVYEYMANGSLDSFIFNNTKGKLLEWPQRFNIICGITRGLMYLHQDSRLRIIHRDLKASNVLLDDNLNPKISYFGTARIFGADQTEGNTKRIIGTYGYMAPEYAVDGLFSMKSDVFSFGILLLEIICGKRNKAYYHMDGILNLVGQAWTLWKEDRALELVDSNIGNTYVVSEVLRCMHVSLLCVQQNPNDRPTMTSVILMLGSEMELVEPKEPGFISRNISTEHTSQKDSSSVNDVTISLIDAR. 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04616 821 PIRSF SRK 1 821 IPR024171 GO:0004674
Seca4g04616 821 SMART serkin_6 507 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04616 821 SMART blect_4 26 146 IPR001480 -
Seca4g04616 821 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 769 - -
Seca4g04616 821 Pfam Domain of unknown function (DUF3403) 781 821 IPR021820 GO:0004674
Seca4g04616 821 FunFam receptor-like serine/threonine-protein kinase SD1-8 480 582 - -
Seca4g04616 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 583 786 - -
Seca4g04616 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Seca4g04616 821 ProSiteProfiles Protein kinase domain profile. 507 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04616 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 16 143 - -
Seca4g04616 821 Gene3D Phosphorylase Kinase; domain 1 478 582 - -
Seca4g04616 821 ProSiteProfiles Bulb-type lectin domain profile. 20 140 IPR001480 -
Seca4g04616 821 CDD PAN_AP_plant 330 414 - -
Seca4g04616 821 CDD B_lectin 26 146 IPR001480 -
Seca4g04616 821 SUPERFAMILY Protein kinase-like (PK-like) 487 778 IPR011009 -
Seca4g04616 821 Pfam PAN-like domain 333 401 IPR003609 -
Seca4g04616 821 Gene3D - 14 143 IPR036426 -
Seca4g04616 821 Pfam D-mannose binding lectin 69 172 IPR001480 -
Seca4g04616 821 Gene3D Transferase(Phosphotransferase) domain 1 583 789 - -
Seca4g04616 821 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 177 IPR036426 -
Seca4g04616 821 SMART ntp_6 336 415 IPR003609 -
Seca4g04616 821 ProSiteProfiles PAN/Apple domain profile. 333 416 IPR003609 -
Seca4g04616 821 CDD STKc_IRAK 513 778 - -
Seca4g04616 821 Pfam Protein tyrosine and serine/threonine kinase 508 775 IPR001245 GO:0004672|GO:0006468
Seca4g04616 821 Pfam S-locus glycoprotein domain 204 312 IPR000858 GO:0048544
Seca4g04616 821 Gene3D Hepatocyte Growth Factor 333 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04616 Seca-Chr4 85273864 85278592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04616 421 796 Receptor kinase-like Gene Family AT4G23190 49.211 1.33e-121 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g04616 PK_Tyr_Ser-Thr 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04616 - - gmx:100802962 1082.01