Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04615 ATGGAGATTCTTATTTTCATGGTTACAGTTACCTATATACTCCTTCCCTCTCTCAAATTTACGACAGCTGCTGACTCAATTCGTTTCTCACAGTCCATCAGCGATGGCAACACCTTGGTGTCCCAAAGTGGCAAGTTTGAACTCGGTTTTTTCAGGCCCGGTAACTCTAACAAAACTTACCTTGGTATTTGGTACAAAAACCTCCCTGTCGAGAGAGTTGTTTGGGTTGCAAACAGACTCAACCCCATTAACGGGTCAAACGGCATCTTAACCGTCAACAGTACAGGCAGCCTCATCCTCAGCCAAAACGGCACCGTCGTTTGGAACACAACCTCTCAAAAACAAGCACAGAATCCAGTAGCTGTTCTCTTAGACAGTGGCAATTTTGTGGTAAGAAATGAGGGAGAAACAAACCCTGAAGACTATTTGTGGCAGAGCTTTGACTATCCATCACACACAATGTTGCCTGGGATGAAATTGGGAAGGAACCTAAGAACTGGTCAAAATTGGCAGTTGACATCCTGGAAGAGTCCAGAAGATCCCTCCCCTGGAGATGTTTCTTGGGGTTTAGTATTTCATGCTTATCCTGAGTATGTAATGATGAAGGGAACACAGAAGTTCTACCGTCTTGGACCATGGAATGGCCTATATGTTAGTGGATTACCAGAACAAGAATCAAACTCCTTGATAAATTTCATGTTTGTCACCAGCAGCGATGAGAACTTCTACACTTTTAGCCTCAATAACAATTCTGCTATCTCATTTATAGTATTAAATGATACCAATATTTTTCACTATGTATGGGATGAAGGAGATCATAATTTGAGGATTTACATAAAACTCCCCAAAGACTATTGTGACACATATGGCCTTTGTGGAGCCTATGGGAATTGCAGAATCACCCAAGGAGATGTGTGCCAATGTTTGAAAGGGTTCAGTCCAAAGTCACCACAAGCATGGATCTTAACAGATTGGACTCAAGGATGTGTCCGTGATGAACCGTTAAGCAGCTGCAACGACACACATAAGGATGGGTTTATCAAATTTGAAGGACTTAAAGTTCCAGATACTACACATAGTTGGTTAGATGAAAGTATGGGTCTAGAGGAATGCAGAGACAAGTGCTTGAATAATTGCTCTTGTATGGCTTATGCAAATTCAAACATAAGTGGAGCAGGTAGTGGTTGTGTCATGTGGTTTGAAGATCTAATTGACATAAAGCAATTTGAAGATGGTGGGCAAGATCTATATATTCGGATGTCTGATTCAGAGTTAGAGCGTGAAAATAGGCGTAAAAGGAAGAGAAGGATCATAATTACTACCACCATTGCTTCAATTTGCGGGGTGCTGTTACTATGTCTTTATTTTATCAGGAGAGTTAGAAGGAAGATTGCTGAGAGATATCAATGGCATGTGGATGAATTGGATCTTCCATTATTTGATCTACCAACAATTTCTATTGCCACTAATGGCTTTTCAATGAATAAAAAGATTGGAGAAGGTGGTTTTGGACCTGTATATAAGGGGAATTTAGTAGATGGTCAAGAAATTGCTGTCAAGAAACTTTCAAGCTTGTCGGGGCAAGGAATGACTGAGTTCATAAATGAAGTAAAACTAATTGTACAACTTCAACACCGAAATCTTGTGAAGCTTCTAGGTTGTTGCATACAAGGAGAACAACAAATGTTGGTTTATGAATACATGGCTAATGGCAGCCTAGACTCTTTTATATTCGGTTCAATATTGAATAGCATATTTGGTTTGAATAAAGCAGATAATACCAAGGGTAAATTGTTAAACTGGCCTCAACGATTCAACATAATATGCGGAATTGCTAGAGGGTTGATGTATCTTCATCAAGATTCAAGATTGAGGATTATCCATAGAGATCTCAAAGCAAGCAATGTTTTACTTGATGATAATTTGAATCCAAAAATATCAGATTTTGGAACTGCTAGACTTTTTGGAGGAGATCAAACTGAAGGAAAAACAAAAAGAATAATTGGGACACATGGGTACATGGCACCCGAATATGCTATTGATGGGTTATTTTCTATAAAATCTGACGTTTTTAGCTTCGGAATTTTATTGTTGGAGATTATATGTGGCAAAAGAAATAGGTCATATTATCACATGGATGATAGTCTTAACCTTGTTGGCCAAGCTTGGACAATGTGGAAAGAGGACAAGGCTTTAGAGTTGATTGACTCTAACATAGGTGACACATATGTTGTATCAGAAGTGTTGCGTTGCATGCAAGTTAGTTTCTTGTGCGTGCAGCAAAACCCAAATGATAGACCAACCATGACGTATGTGATTTTAATGTTGGGGAGTGAGATGGAATTGATGGAGCCTAAAGAACCTGGTTTCATTTCAAGAAATATTCCAACTGAATCACATTTACACACAAGTCAAAAGGATACTAGTTCAGTAAATGAAGTTACCATTTCCTTAGTAGATGCTCGATGA 2469 0.39 MEILIFMVTVTYILLPSLKFTTAADSIRFSQSISDGNTLVSQSGKFELGFFRPGNSNKTYLGIWYKNLPVERVVWVANRLNPINGSNGILTVNSTGSLILSQNGTVVWNTTSQKQAQNPVAVLLDSGNFVVRNEGETNPEDYLWQSFDYPSHTMLPGMKLGRNLRTGQNWQLTSWKSPEDPSPGDVSWGLVFHAYPEYVMMKGTQKFYRLGPWNGLYVSGLPEQESNSLINFMFVTSSDENFYTFSLNNNSAISFIVLNDTNIFHYVWDEGDHNLRIYIKLPKDYCDTYGLCGAYGNCRITQGDVCQCLKGFSPKSPQAWILTDWTQGCVRDEPLSSCNDTHKDGFIKFEGLKVPDTTHSWLDESMGLEECRDKCLNNCSCMAYANSNISGAGSGCVMWFEDLIDIKQFEDGGQDLYIRMSDSELERENRRKRKRRIIITTTIASICGVLLLCLYFIRRVRRKIAERYQWHVDELDLPLFDLPTISIATNGFSMNKKIGEGGFGPVYKGNLVDGQEIAVKKLSSLSGQGMTEFINEVKLIVQLQHRNLVKLLGCCIQGEQQMLVYEYMANGSLDSFIFGSILNSIFGLNKADNTKGKLLNWPQRFNIICGIARGLMYLHQDSRLRIIHRDLKASNVLLDDNLNPKISDFGTARLFGGDQTEGKTKRIIGTHGYMAPEYAIDGLFSIKSDVFSFGILLLEIICGKRNRSYYHMDDSLNLVGQAWTMWKEDKALELIDSNIGDTYVVSEVLRCMQVSFLCVQQNPNDRPTMTYVILMLGSEMELMEPKEPGFISRNIPTESHLHTSQKDTSSVNEVTISLVDAR. 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04615 822 PIRSF SRK 1 822 IPR024171 GO:0004674
Seca4g04615 822 Gene3D Transferase(Phosphotransferase) domain 1 568 787 - -
Seca4g04615 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 147 - -
Seca4g04615 822 Pfam PAN-like domain 338 406 IPR003609 -
Seca4g04615 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 568 784 - -
Seca4g04615 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Seca4g04615 822 SUPERFAMILY Protein kinase-like (PK-like) 471 776 IPR011009 -
Seca4g04615 822 SMART blect_4 30 150 IPR001480 -
Seca4g04615 822 CDD STKc_IRAK 498 776 - -
Seca4g04615 822 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
Seca4g04615 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 457 567 - -
Seca4g04615 822 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 767 - -
Seca4g04615 822 Pfam Domain of unknown function (DUF3403) 779 822 IPR021820 GO:0004674
Seca4g04615 822 Pfam Protein tyrosine and serine/threonine kinase 493 773 IPR001245 GO:0004672|GO:0006468
Seca4g04615 822 SMART serkin_6 492 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04615 822 ProSiteProfiles PAN/Apple domain profile. 338 421 IPR003609 -
Seca4g04615 822 Pfam D-mannose binding lectin 73 176 IPR001480 -
Seca4g04615 822 Pfam S-locus glycoprotein domain 208 316 IPR000858 GO:0048544
Seca4g04615 822 Gene3D - 19 147 IPR036426 -
Seca4g04615 822 Gene3D Phosphorylase Kinase; domain 1 456 567 - -
Seca4g04615 822 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 337 420 - -
Seca4g04615 822 ProSiteProfiles EGF-like domain profile. 282 318 IPR000742 -
Seca4g04615 822 CDD B_lectin 30 150 IPR001480 -
Seca4g04615 822 ProSiteProfiles Protein kinase domain profile. 492 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g04615 822 SMART ntp_6 341 420 IPR003609 -
Seca4g04615 822 CDD PAN_AP_plant 336 419 - -
Seca4g04615 822 ProSiteProfiles Bulb-type lectin domain profile. 24 144 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04615 Seca-Chr4 85247247 85251957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04615 437 794 Receptor kinase-like Gene Family AT4G23190 48.774 3.68e-115 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g04615 PK_Tyr_Ser-Thr 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04615 - - gmx:100802962 1107.05