Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04614 ATGGGGACCAAGACGAAGAAAGCCACGGAGAACAATTTAAAAGGGGTTACCGCTAAACACTCCCTTTCAGGCAACAAAACAGAGGCTGCTGAGTTTTTGCCTTTGGAAGGTGGTCCTGCTCGCAAAATTCTTGAACAGAAACCGTTAGATAACAGTGCCACGGTTTTGTATGTTGGTAGGATTCCGCATGGATTCTATGAGAAGGAGATGCAAGGTTATTTTGGACAATTTGGTACTATCAAGAGACTGAGGGTTGCAAGAAATAAAAGGACAGGAAAATCAAAACATTTTGGTTTCATAGAATTTGAATCTCCTGAGGTAGCAAAAATTGTAGCTGAGACCATGCACAATTATCTGCTGTTTGAACACCTTCTACAGGTTTATCTGATACCTCCAGAGCATGTTCATCCAAAGCTATGGAGAGGTTTCAATTACCGTCACAAGCCACTGGACTCGGTTCAAATTGAAAGAGAGCGACATGACAAGGAAAGAACATTGGAAGGACACAAGAAGTTGGTGGAGAAGATTGTGAAACGTGATCAAAAGCGACGGAAGAGAATAGAGGCTGCAGGCATTGATTATGAATGCCCTGAGATTGTGGGTAACATCCAGCCTGCTCCAAAGAAATTGAAATTTGAAGATTAA 645 0.4202 MGTKTKKATENNLKGVTAKHSLSGNKTEAAEFLPLEGGPARKILEQKPLDNSATVLYVGRIPHGFYEKEMQGYFGQFGTIKRLRVARNKRTGKSKHFGFIEFESPEVAKIVAETMHNYLLFEHLLQVYLIPPEHVHPKLWRGFNYRHKPLDSVQIERERHDKERTLEGHKKLVEKIVKRDQKRRKRIEAAGIDYECPEIVGNIQPAPKKLKFED. 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04614 214 SMART rrm1_1 55 128 IPR000504 GO:0003723
Seca4g04614 214 CDD RRM_NIFK_like 55 127 - -
Seca4g04614 214 MobiDBLite consensus disorder prediction 1 22 - -
Seca4g04614 214 Gene3D - 6 129 IPR012677 -
Seca4g04614 214 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 123 IPR000504 GO:0003723
Seca4g04614 214 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 6 213 - -
Seca4g04614 214 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 132 IPR000504 GO:0003723
Seca4g04614 214 SUPERFAMILY RNA-binding domain, RBD 42 143 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04614 Seca-Chr4 85205888 85212128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04614 52 127 Eukaryotic Initiation Factors Gene Family AT1G71770 35.526 1.48e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04614 K14838 - gmx:100778780 355.525