Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04607 ATGGCAGATGATCAGTTTCAAGCAAGTGCAAACTGGTGGGAGTCAGGGAGAAACATGAGGTTTGAAAGTGGGGAATCACAGTCTTCTTCATCTGGACTCACCAACATAGGCAACTTTGGAGGATGGCAACAACAACATCAACAACATCATGATACCATATCTGCCTCAGGTAGTTCCTCTGTGGTTTTCCATGATACCCAGAAGCTTCAACCTCCTGATTCTGCCACTTCCAGCAACGACCCCAACTTGCATATGATGGGTTTAGGCCTTTCATCAAGAGCCATGGATTGGAATCAAGCATCTTTGATACGAGGTGAGAAGGCTTCAGAGGGCAGTTTCAGGTCGATGCTGCAAGAGAATTTGAGCTCATCAAGCACCAATTTTCAGCAAGAAACTGGTGGGGTTGGTTTATCTCATTGGAGACCGGAGAAGTTGTTCTCTCCAGAAGCTTCTAGTAATGAATTCAAGCAACAAGTGAATAGGGGTTTCTCTTTGGATCAAACCCAATTTAGTCCTCAATATAGCTCAGGGGATAGCACTGTGACAAGCCAAGGTTTGCCTTGTACTTTTCAGATGGATTCCTCAGCTTTATATGGGAACACTTCAATATTACAAGGTCTATTAGGACCTGAAAACAATCAACCCCAACAAGGTTCATTTGAGAATCGCCAAATGAATTTCCCATACTCAACAAGCTATGGTTTGAACTCCAATGAGTTAATGCCTTCTTGGTCTAAAGTTCCTCAGTTCTTAAGAGCTTCACCTCCTAAACAACAACAACCACAAAATAACCAGTTGCATTTCACCAACAACGCTCCCTTTTGGAATGCTAATTCTGAGACCACTATTAAGGATGCTCGATCCAGCTTCTTCCCCTCAATGCAACCCCCATTTCCCACACCAAATTTTGATACACAATCAAAGATAAATAAAACCATGGTTTTGCAGAATATATCTGAAGTTAGAGAGTCAAGTACTGGTGTGGTGAAGAAAAGTGGAAGTGAACCAGCACCCAAAAGGCCCAGGAATGAAACCCCATCACCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCTTCAGTGCTCTCTGAAGCCATTGAATATATCAAATTCCTTCATGAACAAGTGACTGTTTTAAGCACCCCATATATGAAAAGTGGAGCTCCAATACAGCATCAACAGAGTTCTGGTAAATCTAAGGAAGGTGATGGTCCAAAACAGGATCTTAGAAGCCGAGGGCTATGTTTGGTGCCAGTTTCTAGTACATTTCCAGTGACTCATGAACCTACAGTTGAATATTGGACGCCAACATTTGGAGGAACTTACAGATAG 1392 0.4274 MADDQFQASANWWESGRNMRFESGESQSSSSGLTNIGNFGGWQQQHQQHHDTISASGSSSVVFHDTQKLQPPDSATSSNDPNLHMMGLGLSSRAMDWNQASLIRGEKASEGSFRSMLQENLSSSSTNFQQETGGVGLSHWRPEKLFSPEASSNEFKQQVNRGFSLDQTQFSPQYSSGDSTVTSQGLPCTFQMDSSALYGNTSILQGLLGPENNQPQQGSFENRQMNFPYSTSYGLNSNELMPSWSKVPQFLRASPPKQQQPQNNQLHFTNNAPFWNANSETTIKDARSSFFPSMQPPFPTPNFDTQSKINKTMVLQNISEVRESSTGVVKKSGSEPAPKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQHQQSSGKSKEGDGPKQDLRSRGLCLVPVSSTFPVTHEPTVEYWTPTFGGTYR. 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04607 463 MobiDBLite consensus disorder prediction 1 85 - -
Seca4g04607 463 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 410 IPR036638 GO:0046983
Seca4g04607 463 FunFam Transcription factor bHLH123 family 353 415 - -
Seca4g04607 463 Gene3D - 353 414 IPR036638 GO:0046983
Seca4g04607 463 MobiDBLite consensus disorder prediction 322 351 - -
Seca4g04607 463 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 128 444 - -
Seca4g04607 463 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 392 IPR011598 GO:0046983
Seca4g04607 463 MobiDBLite consensus disorder prediction 1 87 - -
Seca4g04607 463 CDD bHLH_AtbHLH_like 349 400 IPR045239 -
Seca4g04607 463 MobiDBLite consensus disorder prediction 407 431 - -
Seca4g04607 463 SMART finulus 354 398 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04607 Seca-Chr4 84884189 84887537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04607 104 463 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 45.137 1.28e-81 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04607 - - gmx:100818424 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04607 4 84884189 84887537 Seca4g04607 4 84884189 84887537 ECH