Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04606 ATGCTTGACTACCACACATCTCACATTGCTGTCAAGTTTGCTAAACTTGTGACCAAGATTGACAGGCGATCTGGTAAGGATCTTGAGAAGGAGCCCAAATTCTTGAAAAATGGAGATGCAGTTTTTGTCAAGATGATTCCCACCAAGCCCATGGTGGTTGAAACTTTCTCTGAGTATCCTCCTCTTGGTCGATTTGTTGTGAGGGACATGCGTCAAACTGTTGTTGTGGGAGTCATCAAGAATGTGGAGAAGAAGGACCCTACCGGAGCCAAGGTCACTAAGGCTGCACAAAAAAAGAAGCAAATGCAACAGTTGTTCCTGTTGAATCCTGTTTCTGGTGCTTCAAGAATCATTGGAGTTGACTTAGTTTCCAGCCGATTTGAACTAGCTAAAAAGTTTGGGGTTAATGAGTTTGTCAACCCAAAAGATCATGACAAACATGTACAGCAGGTGATTGTTGAAATGACCAATGGTGGTGTGGATCGTGCTGTTGAATGTACTGGCAGCATCCAGGCCATGATCTCAGCATTTGAATATGTCTATGATGGTTGGGGTGTTGTTGTACTTGTTGGTGTGCCAAGTAAAGATGATGCATTCAAATAA 603 0.4295 MLDYHTSHIAVKFAKLVTKIDRRSGKDLEKEPKFLKNGDAVFVKMIPTKPMVVETFSEYPPLGRFVVRDMRQTVVVGVIKNVEKKDPTGAKVTKAAQKKKQMQQLFLLNPVSGASRIIGVDLVSSRFELAKKFGVNEFVNPKDHDKHVQQVIVEMTNGGVDRAVECTGSIQAMISAFEYVYDGWGVVVLVGVPSKDDAFK. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04606 200 Gene3D Translation factors 1 83 - -
Seca4g04606 200 PANTHER ELONGATION FACTOR 1 ALPHA 2 102 - -
Seca4g04606 200 FunFam S-(hydroxymethyl)glutathione dehydrogenase 109 200 - -
Seca4g04606 200 FunFam Elongation factor 1-alpha 1 83 - -
Seca4g04606 200 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 112 198 IPR036291 -
Seca4g04606 200 Gene3D - 106 200 - -
Seca4g04606 200 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 1 82 IPR009001 -
Seca4g04606 200 Pfam Zinc-binding dehydrogenase 112 198 IPR013149 -
Seca4g04606 200 Pfam Elongation factor Tu C-terminal domain 2 82 IPR004160 -
Seca4g04606 200 CDD EF1_alpha_III 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04606 Seca-Chr4 84868131 84868733 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04606 1 93 Eukaryotic Initiation Factors Gene Family AT1G07930 83.871 7.97e-50 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04606 K03231 - ini:109192868 169.474