Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04596 ATGATCCCTAAGGATCTTCATTACAAAGAAGAGATTCAATGTTATCTGACTCTTTTCGATAAGAGACAAAAAGAATTTTCTGAATCTCAACAGGAATGGATCAAAGGTTTCTCAAAATTATGTCATAATGCTGATGAGATTCTGGCAAGCGTACCAAAATTTCAGCAGTATAATAGGCCTTGTAACAAACCAGGCAAGATTACGGATATTGCTTCTCTTGAGAAGTTCCTTCGGGAGAGGATCAAAGTCTGCGGCAAGGCTGGTGCCCTCGGTGATTCCATTACCGTTACTCTGGAAAAGACCAAGATCACCGTCACCTCCGACAACAACTTCTCCAAACGACAATGTTGTGAATCTGGACCAGTTACTGAACTTGATGGTGGTTCCAACTTAGCTTCAGTTGGTGCTATGCGATTCATTTGTTTAAACCTATACATTCCATTGACATTGAATTTGTGGATACAAGTCTTCTCTCATCTGGGGGCCAGACCTTTCAGATTTGAGGCTATGTGGGCTACACATCAAGACTATGAGAAGGTAGTTCAGAAATCCTGGGATGAGCATCCAGGGAGTGCCTTACGTCAGGGTATTCAACGTTGCCTTGAAAGTGTGGACTCAGCTGCCCTTTTGGAGACTCAGAAGAAGCTGCAATCTGAATATGATGTTATTCTCTTCCAGGAAGAGGTGTTCTGGTACCAGAAATCTAGGGAGCAAAGGGTGAAGTTTGGAAATAAGAACACCCCTTTTTTCCACACTCAAACCATTGTTCGGAGGAAACGTAACTGCATCCATGGTTTACATATTGCTTCCGGAGAATGGTGCACTGATAATGATATTCTCCAAAGAGAAGCAATCAGTTTCTATAAGAAATTGTTCTGTGTCAAGGAGGCGCAAGGTACTCCCCTTAATACACCTGGATTACCCCAGCTAGGAGATGATTGTATTAACCAGATCATAAAACCAGTTTCGAAAGATGAGGTTTTCCAAGCTCTCATGGCTATGAAGTCTTACAAAGCGCCAGGACCCGATGGTTTCCAACCAATTTTCTTCAAACTGTATTGGCATATTGTAGGAGAAGATGTTTGGAAGGTGTTGATCACCAAAGTCCTTGTCAACAGGTTAAGACCATTTCTCAATGATATCATTAGCCCCCTGCAAAGCAGTTTCATTCCGGGGAGAGGTACTTTGGATAATGGCATCATCCTGCAGGAGGTCAGGTTCATGACAAGTCTAATCCATGATTTCTGTTTGGTATCAGGATTAAAAATTAATTTGGAAAAATCTAGAGTCTTATCATCTAAGGGAATTCCTATTGCTAAGAAGGATAATATCCAGGCCATCACTTACATCAGATTCACGATGAATTTGGGTAAGTATCTTGGATTCCAGTTGGTCCAAGGTAGGCTCACTAAGGACCAATTTCAACCCGTACTTGACCGTGTGAACTCCAGATTAGCATCCTGGAAACAGAAGCTGCTCAACAAGTCGGGTAGAGTTACTTTGGTGAATTCAGTTTTAGCATCCATACAAACACATACAATGCAAATGCATTGGCTGCCTCAGCATGTTTGCAATAAACTTGATCTTACAGCCAGAAATTTCATCTGGAAAAATGCGAATAACAAAGGCACCAATATCTTGGATTCCCCTGTGACGAAAGGCTCCTATACTTGGAATTCAATTTTGAAAGCTAGAAAAAAGTTGAAACCTGGTTATGGTTTTAAGGTGGGAAGGGGGGACTCAAATTGGCTTGGTATTGGCCCCCTTTGCTCTCAGAGCATTCATGTTTGTGATGATTTGGATGACACCTACACCTGGACAGTGCATGTGTCCGAGTTTTATTCTGCTAGAAGTGGCTATGGTTGGCTGTTAAATCAGGAGGCTAGTATCACTGATTCTTGGAGTTGGGTCTGGAAGTTAAAAGCTCCAGAAAACATCAAATTTTTTGTTTGGCTTTGCTGTCATGGTTCTATTCCTACTCGAGTTGTGCTCAACCATAGGGGCATTCCTCTAGATACTCAATGTCCTTGTTGTGGTAATGGGGATGAGAACATTTTCCACTGTCTGCGGGACTGTAACCGAGCTGGAGAGGTTTGGAAATCTTTGGGATTGGATAATTATCAATCCTTCTACATTAGCATGTCTGTTAGGACGTGGATCTTTGAGGGGGTGAAGGAGAATCACATGATGTTCTTGGCTGCTCTTTGGGGTATTTGGAAAAGGAGGATTAGGTTTATCTTTGATTGCAAAGAGACACCTTTATGGGAGGTTGCTTATGGAATTATATCTCTTACTACTGTCATGGGAAAATGTTATTCTTCTACTGATATTGCTAGGGAGCCTCGACATGTCAGGTGGGAAGAACCAACGTTAGACCAAGTCGCCTTGAATGTCGATGGCAGTGTCATGGGGGATGTTCTGTTGGCTGAATTGGTGTCTATCTCAAGAGGCCTGAAGATCTGTTGGGACAAGAAGTTCACAAATGTTAAATGTATGAGTGACTCTCTTACAGCTGTGTCCCTCATCATGGGAGATGTTTCAAACTTCCACAGATATGCTAACATTGGCAAGGATATTAAGAATCTCATTGCTAGAGATTGGTCTGTCTCGGTCAAGCATGTATTGAGAGAAAGTAATTCCTATGCAGATTTCTTAGCCAAGAAAGGCACAAGGGCTGATGTTGATTTTTGTGAGGTGTTAGATCCTCCAGAGGGCTTGGAGCAGCTTCTCCACTTAGATGCTTTAGGTGTAACGTTTATTCGTTTGTAG 2769 0.4215 MIPKDLHYKEEIQCYLTLFDKRQKEFSESQQEWIKGFSKLCHNADEILASVPKFQQYNRPCNKPGKITDIASLEKFLRERIKVCGKAGALGDSITVTLEKTKITVTSDNNFSKRQCCESGPVTELDGGSNLASVGAMRFICLNLYIPLTLNLWIQVFSHLGARPFRFEAMWATHQDYEKVVQKSWDEHPGSALRQGIQRCLESVDSAALLETQKKLQSEYDVILFQEEVFWYQKSREQRVKFGNKNTPFFHTQTIVRRKRNCIHGLHIASGEWCTDNDILQREAISFYKKLFCVKEAQGTPLNTPGLPQLGDDCINQIIKPVSKDEVFQALMAMKSYKAPGPDGFQPIFFKLYWHIVGEDVWKVLITKVLVNRLRPFLNDIISPLQSSFIPGRGTLDNGIILQEVRFMTSLIHDFCLVSGLKINLEKSRVLSSKGIPIAKKDNIQAITYIRFTMNLGKYLGFQLVQGRLTKDQFQPVLDRVNSRLASWKQKLLNKSGRVTLVNSVLASIQTHTMQMHWLPQHVCNKLDLTARNFIWKNANNKGTNILDSPVTKGSYTWNSILKARKKLKPGYGFKVGRGDSNWLGIGPLCSQSIHVCDDLDDTYTWTVHVSEFYSARSGYGWLLNQEASITDSWSWVWKLKAPENIKFFVWLCCHGSIPTRVVLNHRGIPLDTQCPCCGNGDENIFHCLRDCNRAGEVWKSLGLDNYQSFYISMSVRTWIFEGVKENHMMFLAALWGIWKRRIRFIFDCKETPLWEVAYGIISLTTVMGKCYSSTDIAREPRHVRWEEPTLDQVALNVDGSVMGDVLLAELVSISRGLKICWDKKFTNVKCMSDSLTAVSLIMGDVSNFHRYANIGKDIKNLIARDWSVSVKHVLRESNSYADFLAKKGTRADVDFCEVLDPPEGLEQLLHLDALGVTFIRL. 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04596 922 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 158 889 - -
Seca4g04596 922 Gene3D - 798 895 IPR036397 GO:0003676
Seca4g04596 922 Pfam Reverse transcriptase-like 805 888 IPR002156 GO:0003676|GO:0004523
Seca4g04596 922 CDD RNase_H_like 796 887 IPR044730 -
Seca4g04596 922 Gene3D - 52 184 IPR038526 -
Seca4g04596 922 Pfam zinc-binding in reverse transcriptase 614 699 IPR026960 -
Seca4g04596 922 SUPERFAMILY Ribonuclease H-like 794 891 IPR012337 -
Seca4g04596 922 Pfam Ribosomal L22e protein family 65 115 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04596 Seca-Chr4 84724081 84733350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04596 61 114 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 73.214 2.80e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04596 - - adu:107490459 341.658